#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 20, 2026; 13:18 GMT

TreeBASE (cc) 1994-2008

Study reference:
Untereiner W., Naveau F., Bachewich J., & Angus A. 2006. Evolutionary relationships
of Hyphodiscus hymeniophilus (anamorph Catenulifera rhodogena) inferred from
b-tubulin and nuclear ribosomal DNA sequences. Canadian Journal of Botany, 84(2):
243-253.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1430]

[ The following blocks are input data for analysis step 2743 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep2743;
        DIMENSIONS NTAX=6;
        TAXLABELS
            Catenulifera_rhodogena_305ITS
            Catenulifera_rhodogena_328ITS
            Catenulifera_rhodogena_410ITS
            Catenulifera_rhodogena_411ITS
            Catenulifera_rhodogena_412ITS
            Hyphodiscus_hymeniophilus
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1659]

	TITLE 'ITS+btub';
	LINK TAXA = TaxaForAnalysisStep2743;
	DIMENSIONS NCHAR=979;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970         ]
[                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Catenulifera_rhodogena_305ITS     GGATCATTACAGAGTTCGTGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGTAGAGGCTCGCCCTCTCCACCGGCTTCGGCTGGTGTGTGACCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCC-TCAAGCTCGGCTTGGTATTGGGCTCTCGCCGTTCACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACCCGGTGGTTACTGGCCAGCAACCCCCAACTTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCGTCGCGACTTTTCTCTCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACGATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTCTGCGGCGACACTCGAGCTCGTCATCACAAATTCGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTTCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATACAGACATCAACACGCGTAATAACATCAAAACTGATGAGTCAACTAGGCTTCTGGAAATAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACCATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Catenulifera_rhodogena_328ITS     GGATCATTACAGAGTTCATGCCCTGACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGCCGCGGAGGTACGCC-TCTCCACCGGCTTAGGCTGGTGTGCGCCCGCCAGAGGATCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATACAATAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCCTCAAGCCTGGCTTGGTATTGGGCTCTCGCCGCTGACCCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACACGGAGGTCACTGGCCAGCAACCCCCAACCTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCG-CGCGACTCTTCTCCC-ACTGCGCGACATCAATATCTCAAAGACTGACAAATACAGGCAAACTATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTGAGTGATTTCTGCAGCGACACTCGAGGTCGTCTTTACAACATGGCTCAACTGAC--GATTTGCAGGTACAATGGCACGTCTGATCTCCAACTCGAGCGGATGAATGTCTACTTCAATGAGGTATATATAGATATCAATACGCGTAATAATATCAAAACTGATGGGTCAACTAGGCTTCCGGCAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATTTGGAGCCGGGTACCATGGATGCCGTTCGTGCTGGTCCATTCGGGCAACTCTTCCGCCCCGACAACTTTGTCTTCGGTCAATCTGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Catenulifera_rhodogena_410ITS     GGATCATTACAGAGTTCGTGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGTAGAGGCTCGCCCTCTCCACCGGCTTCGGCTGGTGTGTGACCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCC-TCAAGCTCGGCTTGGTATTGGGCTCTCGCCGTTCACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACCCGGTGGTTATTGGT-AGCAACCCCCAACTTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCGTCGCGACTTTTCTCTCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACGATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTCTGCGGCGACACTCGAGCTCGTCATCACAAATTCGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTTCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATACAGACATCAACACGCGTAATAACATCAAAACTGATGAGTCAACTAGGCTTCTGGAAATAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACCATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Catenulifera_rhodogena_411ITS     GGATCATTACAGAGTTCGTGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGTAGAGGCTCGCCCTCTCCACCGGCTTCGGGTGGTGTGTGACCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCC-TCAAGCTCGGCTTGGTATTGGGCTCTCGCCGTTCACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACCCGGTGGTTACTGGCCAGCAACCCCCAACTTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCGTCGCGACTTTTCTCTCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACGATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTCTGCGGCGACACTCGAGCTCGTCATCACAAATTCGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTTCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATACAGACATCAACACGCGTAATAACATCAAAACTGATGAGTCAACTAGGCTTCTGGAAATAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACCATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Catenulifera_rhodogena_412ITS     GGATCATTACAGAGTTCGTGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGTAGAGGCTCGCCCTCTCCACCGGCTTCGGCTGGTGTGTGACCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCC-TCAAGCTCGGCTTGGTATTGGGCTCTCGCCGTTCACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACCCGGTGGTTACTGGCCAGCAACCCCCAACTTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCGTCGCGACTTTTCTCTCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACGATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTCTGCGGCGACACTCGAGCTCGTCATCACAAATTCGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTTCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATACAGACATCAACACGCGTAATAACATCAAAACTGATGAGTCAACTAGGCTTCTGGAAATAAGTATGTCCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACCATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Hyphodiscus_hymeniophilus         GGATCATTACAGAGTTCATGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGCAGAGGCTCGCC-TCTCCACCGGCTTCGGCTGGTGTGTGCCCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACTC-TCAAGCCTGGCTTGGTATTGGGCTCTCGCCGTTAACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGTAGTAAATATCCTCGCTATAGGGACCCGGTGGTTACTAGCCAGCAACCCCCAACTTTCTAAGTTTGACCTCGGA????????TAATAGGTGCCGCTTTCTGGTGTGTTTTCCTCGCCGCGACTTTTCTCCCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACTATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTTTGCGGCGACACTCGAGGTCGTCATCACAATTTTGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTCCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATATAGACATCAACACGCGTAATAACATCGAAACTGATGGGTAAACTAGGCTTCTGGCAACAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACTATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAA???????????????????????????????
;
END;

BEGIN SETS;
	CHARSET ITS (CHARACTERS = 'ITS+btub') =  1-497;
	CHARSET bt (CHARACTERS = 'ITS+btub') =  498-979;
END;
BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 'ITS+btub') = 
		N: 1-979;
CODONPOSSET  CodonPositions (CHARACTERS = 'ITS+btub') = 
		N: 1-979;
END;
[ The following blocks are output data for analysis step 2743 ]
BEGIN TREES;
      TITLE Tb7517;
      LINK TAXA = TaxaForAnalysisStep2743;
      TREE Fig._1 = [&R] ((Catenulifera_rhodogena_328ITS,(Catenulifera_rhodogena_305ITS,Catenulifera_rhodogena_412ITS,Catenulifera_rhodogena_410ITS,Catenulifera_rhodogena_411ITS)),Hyphodiscus_hymeniophilus);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2606]


END;