#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 12, 2026; 0:26 GMT TreeBASE (cc) 1994-2008 Study reference: Crous P.W., & Groenewald J.Z. 2020. Fungal Planet description sheets: 1042-1111. Persoonia, 44: 301-459. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S26166] [ The following blocks are input data for analysis step 29536 ] BEGIN TAXA; TITLE TaxaForAnalysisStep29536; DIMENSIONS NTAX=29; TAXLABELS '-' Backusella_lamprospora_MH866118.1 Candida_albicans_U45776.1 Candida_aquae Candida_broadrunensis_KY106372.1 'Candida frijolesensis NG_054802.1' Candida_gigantensis_AY520316.1 Candida_glabrata_MH545922.1 'Candida labiduridarum NG_042506.1' 'Candida neerlandica NG_054776.1' Candida_pellucida_MN908679.1 Candida_pellucida_MN908680.1 Candida_pellucida_MN908681.1 'Candida prachuapensis NG_054767.1' Candida_pseudoviswanathii_KM586735.1 Candida_sake_KY106732.1 Candida_saraburiensis_AB534915.1 'Candida saraburiensis NG_054769.1' Candida_sojae_KJ722420.1 'Candida tetrigidarum NG_042507.1' Candida_tropicalis_AB034689.1 Candida_tropicalis_KX198669.1 Candida_viswanathii_MF682371.1 Candida_viswanathii_U45752.1 Suhomyces_atakaporum_KY106307.1 Suhomyces_panamericanus_JQ025407.1 Suhomyces_taliae_KY106790.1 Suhomyces_tanzawaensis_KY106794.1 textoris_LC497849.1 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M60771] TITLE Fig._2_Overview_Saccharomycetes_LSU_alignment; LINK TAXA = TaxaForAnalysisStep29536; DIMENSIONS NCHAR=1094; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] '-' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA?{AGT}G{AGT}ACTCAATCC{AGT}AG{AC}TACTAGATCTTTGACCTCAAGTCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTCAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGGGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGGGATGATCCAGGTCCGTGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGCATTTTGCA---TGTTGCTTCT-TCGGGGGC----GGCCTCTGCGGCTTGCCGG---GCCAGCATCAGTTTGG-GCGGCAGGAGAATTGCGCGGGAATGTGGCACG--GTCTCGGCC--GTGTGTTATAGCCCGT--GTGGATGCT----GCCAGCCTAGACTGAGGACTGCGGT------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------- Backusella_lamprospora_MH866118.1 -------------------------------------------ATCAATAAGCGGAGGAAAA-GAAA-ATAACAATGATTTCCCTAGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAATCCGGCTGCCCTAGGTAGTTGGAGTTGTAAACTGGAGAAGTGTTTTCCAGGCGAGCCAAGCGAATAAGTCCTTTGGAACGGGGCATCATAGAGGGTGAGAATCCCGTCTTTGGCTTGAGCGATTC-GTCTATTGCGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATTGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTGAAAGGGAACCGTTTGGAGCCAGACCGGCCGTTCTATAATCAATCTCTGCC-TCGGTGGG--GATGCACTTGTAGGGCGTTGGCCTGCCAACAGCAATTTTGCCTGATGGAAAAAACCATGAGGAATGTGGC-----CCTTCG-----GGGTGTTATAGCCTCTTGGAAAATAC-----ATTGGGCGGGATTGAGGACTGCAGCAAATGCTCTTTAGGGCGAAATACCTGGGCGCTTGTGTTGAAGACGTGTAGAATCTCTGCTTCGGGTGGTGCTATGCTCTGATGTGCAACTCGCTTAGACTATTTTCTATTTTTGCTTAGGTTGTTGGCTTAATGACTCTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCCATCATAGGTGCGAGTCTTTGGGTGACAAACCCGCAGGCGCAAGGAAACTG-ATGGGTACGAAGGCCTCACGGCTGGCAGTACCGTCCGGCAAGGACGTTTTAACAGAATTGACCGCGATAAAGCACTTATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA{CG}CCAGAAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAAGAAACTAATCGAACCATCTAGTAGCTGGTTCTGC-------- Candida_albicans_U45776.1 ----------------------------------------------------------------AAA-CCAACAGGGATTGCCTCAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGTC--TTTGGCGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCCGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCGGGTCTGTGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGCA---TGTTGCTCTC-TCGGGGGC----GGCCGCTGCGGTTTACCGG---GCCAGCATCGGTTTGGAGCGGCAGGATAATGGCGGAGGAATGTGGCACG--GCTTCTGCT--GTGTGTTATAGCCTCT--GACGATACT----GCCAGCCTAGACCGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTT-TACCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_aquae -T-?T-{AG}-{CG}--C------AC-------------------------------------------------------------------------------------------------------GGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCAGGTCCGTGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGCATTTTGCA---TGTTGCTTCT-TCGGGGGC----GGCCTCTGCGGTTTGTCGG---GCCAGCATCAGTTTGG-GCGGTAGGACAATCGCGCGGGAATGTGGCACG--GCCTCGGCT--GTGTGTTATAGCCCGC--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTA-TACCTAGGATGTTGGCATAATGATCTTAAGTCGCCCGTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_broadrunensis_KY106372.1 --------------------------------AACTTAAGCATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGTCTTAGTAACGGCGAGTGAAGCGACAAAAGCTCAAATTTGAAATCTGGCGCC--TTCGGTGTCCGAGTTGTAATTTGAAGAAGGTAACTTTGGTTTTGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATG-CCCAATTCCATGTAAAGTGCTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGTCTTACTT-TCGGGTGG----GGCCTCTGCAGTTTACCGG---GCCAGCATCAGTTTGG-ATGGTAGGATAATGACATTGGAATGTGGCTCT--GCTTCGGTA--GAGTGTTATAGCCCTT--GTTGATACT----GCCTGTCTAGACTGAGGACTGCG--------------------------------------------------------------------------------------------------------------TCTTTGACTAGGATGCTGGCATAATGATCCTAAGCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCCGTACGCGTAATGAAAGTGAACGTAGGTGAGAGCCC-TTTGGGTGCATCATCGACCGATCCTGATGTCTT--CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG-AGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAA-AGA--CTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAA--- 'Candida frijolesensis NG_054802.1' -----------------------------------------ATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGGGATGATCCAGGTCCATGTAAAGTTCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGTTGCTTCT-TCGGGGGC----GGCCTCTACAGTTTACCGG---GCCAGCATCAGTTTGGTGCGGTAGGAGAATCGCTTGGGAATGTGGCACG--GCCTCGGTT--GTGTGTTATAGCCCTT--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGA-------------------------------------------------------------------------------------------------------------TTA-TATCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_gigantensis_AY520316.1 -----------------------------------------ATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGCT--TTCAGCGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCCGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCGGGTCTATGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGTTGCTTCT-TCGGGGGC----GGCCTCTACAGTTTGCCGG---GCCAGCATCGGTTTGGAGCGGTAGGATAATTGCTTTGGAATGTGGCACG--GCCTCGGTT--GTGTGTTATAGCCTCT--GCAGATACT----GCCAGCCTAGACCGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTT-TACCTAGGATGTTGGCATAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_glabrata_MH545922.1 TTTGACCTCAAATCAGGTAGGGTTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA-GAAA-CCAACTGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGTACC--TTTGGTGCCCGAGTTGTAATTTGGAGAGTACCACTTTGGGACTGTACTTTGCCTATGTTCCTTGGAACAGGACGTCATGGAGGGTGAGAATCCCGTGT---GGCGAGG-GTGTCAGTTCTTTGTAAAGGGTGCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCATTTGATCAGACATGGTGTTTTGCG---CCCCTTGCCTCTCGTGGGCTTGGGACTCTCGCAGCTCACTGG---GCCAGCATCGGTTTTG-GCGGCCGGAAAAAACCTAGGGAATGTGGCTCTGCGCCTCGGTGTAGAGTGTTATAGCCCTG--GGGAATACG----GCCAGTCGGGACCGAGGACTGCGATA----------------------------------------------------------------------------------------------------------CTTGTTATCTAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTTAAACCCGTACGCGTAATGAAAGTGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Candida labiduridarum NG_042506.1' -----------------------------------------ATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGGGATGATCCAGGTCTATGTAAAGTTCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGTTGCTTCT-TCGGGGGC----GGCCTCTACAGTTTACCGG---GCCAGCATCAGTTTGG-GCGGTAGGAGAATCGCTTGGGAACGTGGCACG--ACCTCGGTT--GTGTGTTATAGCCCTT--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGA-------------------------------------------------------------------------------------------------------------TTA-TATCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Candida neerlandica NG_054776.1' ----------------------------------------------------------------AAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGATCCAGGTCTATGTAAAGTTCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGTTACTTCT-TCGGGGGT----GGCCTCTACAGTTTACCGG---GCCAGCATCAGTTTGG-GCGGTAGGAGAATCGCTTGGGAACGTGGCACG--ACCTCGGTT--GTGTGTTATAGCCCTT--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGAT------------------------------------------------------------------------------------------------------------TTA-TATCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_pellucida_MN908679.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_pellucida_MN908680.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_pellucida_MN908681.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Candida prachuapensis NG_054767.1' ----------------------------------------------------------------AAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCAGGTCTATGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGCA---TGTTGTTCCC-TCGGGGGC----GGCCTCTGCGTTTTACCGG---GCCAGCATCAGTTTGG-GCGGTAGGACAATCGCGCGGGAACGTGGCACG--GCCTCGGCT--GTGTGTTATAGCCCGT--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTA-TACCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_pseudoviswanathii_KM586735.1 ----------------------------------------------------------------AAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCAGGTCCGTGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGCATTTTGCA---TGTTGCTTCT-TCGGGGGC----GGCCTCTGCGGTTTGTCGG---GCCAGCATCAGTTTGG-GCGGTAGGACAATCGCGCGGGAACGTGGCACG--GCCTCGGTT--GTGTGTTATAGCCCGT--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTA-TACCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_sake_KY106732.1 --------------------------------AACTTAAGCATATCAATAAGCGGAGGAAAA-GAAA-CCAACCGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTG---------CGTAAGCCGAGTTGTAATTTGAAGATGGCTACTTTGGTAATGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATG-TCCATTACCGTGTAAAGTGCTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGGCTTGCTT-TCGGGCGG----GTCCTCTGCAGTTTACTGG---GCCAGCATCGGTTTGG-GTGGCAGGATAATAGCATAGGAATGTGGCTCT--ACTTCGGTG--GAGTGTTATAGCCTTT--GTTGATACT----GCCTGCCTAGACCGAGGACTGCGTC------------------------------------------------------------------------------------------------------------TTT-TGACTAGGATGCTGGCATAATGATCCTAAGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCCGTACGCGGAATGAAAGTGAACGTAGATGAGAGCCT-TTTAGGCGCATCATCGACCGATCCTGATGTCTT--CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG-AGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAA-AGA--CTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTT Candida_saraburiensis_AB534915.1 ----------------------------------------------------------------AAA-CCAACAGGGATTGCCTCAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAGGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCAGGTCCGTGTAAAGTTCCCTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGCA---TGTTGCTTCT-TCGGGGGC----GGCCTCTGCGGCTTACCGG---GCCAGCATCAGTTTGG-GCGGTCGGACAATCGCGCGGGAACGTGGCACG--GCCTCGGCC--GTGTGTTATAGCCCGT--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTTATACCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Candida saraburiensis NG_054769.1' ----------------------------------------------------------------AAA-CCAACAGGGATTGCCTCAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAGGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCAGGTCCGTGTAAAGTTCCCTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGCA---TGTTGCTTCT-TCGGGGGC----GGCCTCTGCGGCTTACCGG---GCCAGCATCAGTTTGG-GCGGTCGGACAATCGCGCGGGAACGTGGCACG--GCCTCGGCC--GTGTGTTATAGCCCGT--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTTATACCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_sojae_KJ722420.1 --------------AGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGTCTGGCACTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGATCCAGGCCTATGTAAAGTTCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGTTACTTCT-TCGGGGGT----GGCCTCTACAGTTTACCGG---GCCAGCATCAGTTTGG-GCGGTAGGAGAATTGCGATGGAATGTGGCACG--GCCTCGGTT--GTGTGTTATAGCCTTC--GTAGATACT----GCCAGCCTAGACTGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTTATACCTAGGATGTGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Candida tetrigidarum NG_042507.1' -----------------------------------------ATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGGCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCAGTCCTATGTAAAGTTCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGTTACTTCT-TCGGGGGT----GGCCTCTGCAGTTTGCCGG---GCCAGCATCAGTTTGG-GCGGTAGGACAATCGCGCAGGAACGTGGCACG--GCTTCGGTT--GTGTGTTATAGCCTGT--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGG-------------------------------------------------------------------------------------------------------------TTTATACCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_tropicalis_AB034689.1 ----------------------------------------------------------------AAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGACCCAGGTCCGTGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGCATTTTGCA---TGTTGCTTCT-TCGGGGGC----GGCCTCTGCGGTTTGTCGG---GCCAGCATCAGTTTGG-GCGGTAGGACAATCGCGCGGGAATGTGGCACG--GCCTCGGCT--GTGTGTTATAGCCCGC--GTGGATACT----GCCAGCCTAGACTGAGGACTGCGGT------------------------------------------------------------------------------------------------------------TTA-TACCTAGGATGTTGGCATAATGATCTTAAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_tropicalis_KX198669.1 TTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTTAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCT--TTCAGAGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGTCTGGCTCTTGTCTATGTTTCTTGGAACAGAACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGATCCAGGCCTATGTAAAGTTCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTGGTATTTTGTA---TGTTACTTCT-TCGGGGGT----GGCCTCTACAGTTTATCGG---GCCAGCATCAGTTTGG-GCGGTAGGAGAATTGCGTTGGAATGTGGCACG--GCTTCGGTT--GTGTGTTATAGCCTTT--GTCGATACT----GCCAGCCTAGACTGAGGACTGCGG-------------------------------------------------------------------------------------------------------------TTTATACCTAGGATGTTGGCATAATGATCTTAAGTCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCCGTACGCGTAATGAAAGTGAACGTAGGTGGGGGCCCGTATGGGTGCACCATCGACCGATCCTGATGTCTT--CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG-AGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAA-AGA--CTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTT Candida_viswanathii_MF682371.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candida_viswanathii_U45752.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Suhomyces_atakaporum_KY106307.1 -----------------------------------------------------------------------------------------------------GCGGCAAAAGCTCAAATTTGAAATCTGGC-C----TC-CGGTCCGAGTTGTAATTTGAAGAA-GCGACTTTGGTACCGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATG-TCCGGTGCTATGTAAAGCGTTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTTGTATTTC-CA---TGGCGCTCTT-TCGGGGGT----GTCCTCTG-GGTTTACAGG---GCCAGCATGGGTTCTG-CGGGCGAGATAAGGACTTAGGAATGTGGCTCC--GCTTCGGGG--GAGTGTTATAGCCTG-----ATGTACTGGTCGCCACGCGGGACCGAGGACTGCGAA------------------------------------------------------------------------------------------------------------T------CTAGGATGCTGGCATAATGATCTTAAGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCCGTACGCGGAATGAAAGTGAACGTAGGTGAGAGCT--TC--GGCGCATCATCGACCGATCCTGATGTCTT--CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG-AGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAA-AGA--CTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTT Suhomyces_panamericanus_JQ025407.1 ------------------------ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGC-C----TC-TGGTCCGAATTGTAATTTGAAGAA-GCGACTTTGGTACCGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATGCTCCGGTGCTATGTAAAGCGTTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTTGTATTTC-CA---TGGCGCTCTT-TCGGGGGT----GTCCTCTG-GGTTTACAGG---GCCAGCATGGGTTCTG-CGGGCGAGACAAGGTTCTAGGAATGTGGCTCT--GCTTCGGTG--GAGTGTTATAGCCTG-----GGGTACTAGTCGCCACGCGGGACCGAGGACTGCGAT------------------------------------------------------------------------------------------------------------T------CTAGGATGCTGGCATAATGATCCCAAGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCCGTACGCGGAATGAAAGTGAACGTAGGTGAGAGCT--TC--GGCGCATCATCGACCGATCCTGATGTCTT--CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG-AGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAA-AGA---------------------------------------- Suhomyces_taliae_KY106790.1 ---------------------------------------GCATATCAATAAGCGGAGGAAAAAGAAAACCAACCGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTCTGATTCAGGGTCCGAATTGTAATTTGAAGAA-GCGACTTTGGGCCTGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGAAG-CCCAGGTTCGTGTAAAGCGTTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTTGTTTTTC-CA---TGGCGCTCTT-TTGGGGGT----GTCCTCTG-GGTCTACAGG---GCCAGCATGGGTTTTG-CGGGCGAGACAAGGACTCAGGAATGTGGCTCT--GCTTCGGTG--GAGTGTTATAGCCTG-----GGGTACTGGTCGCCATGCGGGACCGAGGACTGCGGT------------------------------------------------------------------------------------------------------------A------CTAGGATGCTGGCATAATGATCTTAAGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCCGTACGCGGAATGAAAGTGAACGTAGGTGAGAGCCCGCAAGGGCGCATCATCGACCGATCCTGATGTCTT--CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG-AGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAA-AGA--CTAATCGAACCATCTAGTAGCTGGTTCCTGCC------ Suhomyces_tanzawaensis_KY106794.1 ---------------------------------------GCATATCAATAAGCGGAGGAAAA-GAAA-CCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGC-C----TC-TGGTCCGAGTTGTAATTTGAAGAA-GCGACTTTGGTACCGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGC---GATGAGATG-CCCGGTGCCGTGTAAAGCGTTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGAGATCAGACTTTGTATTTC-CA---TGGCGCTCTC-TCGGGGGT----GTCCTCTG-GGTTTACAGG---GCCAGCATGGGTTCTG-CGGGCGAGATAAGGACCTGGGAATGTGGCTCT--ACTTCGGTG--GAGTGTTATAGCCCA-----GGGTACTGGTCGCCACGCGGGACCGAGGACTGCGAA------------------------------------------------------------------------------------------------------------T------CTAGGATGCTGGCATAATGATCTTAAGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCCGTACGCGGAATGAAAGTGAACGTAGGTGAGAGCT--CTAGGGCGCATCATCGACCGATCCTGATGTCTT--CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG-AGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAA-AGA--CTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAG-- textoris_LC497849.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; [ The following blocks are output data for analysis step 29536 ] BEGIN TREES; TITLE Fig._2_Overview_Saccharomycetes_LSU_phylogeny; LINK TAXA = TaxaForAnalysisStep29536; TREE Fig._2_Overview_Saccharomycetes_LSU_phylogeny = [&R] (Backusella_lamprospora_MH866118.1:0.8297021,Candida_glabrata_MH545922.1:0.2154624,(((((((((((((Candida_viswanathii_U45752.1:0.001785535,Candida_viswanathii_MF682371.1:0.003160016,Candida_pellucida_MN908679.1:0.003119237,Candida_pellucida_MN908680.1:0.003166724,Candida_pellucida_MN908681.1:0.001864136):0.02247652,('-':0.003637656,textoris_LC497849.1:0.001578311):0.002788846):0.003637306,Candida_tropicalis_AB034689.1:0.001569719,Candida_aquae:0.001626395):0.005964425,Candida_pseudoviswanathii_KM586735.1:0.003633436):0.008355982,(Candida_saraburiensis_AB534915.1:0.001490075,'Candida saraburiensis NG_054769.1':0.001472261):0.01318791):0.005846838,'Candida prachuapensis NG_054767.1':0.01136167):0.01550702,'Candida tetrigidarum NG_042507.1':0.01878141):0.01474294,('Candida neerlandica NG_054776.1':0.002621114,('Candida frijolesensis NG_054802.1':0.007552476,'Candida labiduridarum NG_042506.1':0.002019903):0.007619719):0.007775779):0.01386152,(Candida_tropicalis_KX198669.1:0.008466841,Candida_sojae_KJ722420.1:0.008911312):0.00932301):0.03484649,Candida_gigantensis_AY520316.1:0.006345545):0.03413304,Candida_albicans_U45776.1:0.02906148):0.05660542,(Candida_broadrunensis_KY106372.1:0.03215793,Candida_sake_KY106732.1:0.05539233):0.03225641):0.02679644,(Suhomyces_taliae_KY106790.1:0.03297966,(Suhomyces_tanzawaensis_KY106794.1:0.01708513,(Suhomyces_atakaporum_KY106307.1:0.0171507,Suhomyces_panamericanus_JQ025407.1:0.01384753):0.007465088):0.02044383):0.08590159):0.06584025); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr133153] END;