#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 15, 2026; 7:55 GMT TreeBASE (cc) 1994-2008 Study reference: Ilves K., & Taylor E. 2007. Evolutionary and biogeographic patterns within the smelt genus Hypomesus (Pisces: Osmeridae) in the North Pacific Ocean. Journal of Biogeography, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1832] [ The following blocks are input data for analysis step 3699 ] BEGIN TAXA; TITLE TaxaForAnalysisStep3699; DIMENSIONS NTAX=15; TAXLABELS Hypomesus_japonicus_10 Hypomesus_japonicus_5 Hypomesus_japonicus_8 Hypomesus_nipponensis_1 Hypomesus_nipponensis_5 Hypomesus_nipponensis_7 Hypomesus_olidus_1 Hypomesus_olidus_4 Hypomesus_pretiosus_1 Hypomesus_pretiosus_BMS2 Hypomesus_pretiosus_JB2 Hypomesus_transpacificus_1 Hypomesus_transpacificus_3 Hypomesus_transpacificus_8 Mallotus_villosus_TC2_outgroup ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1951] TITLE 'Fig4a_mtDNA_MLtree'; LINK TAXA = TaxaForAnalysisStep3699; DIMENSIONS NCHAR=973; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Hypomesus_japonicus_10 TTAATTCAACTACAAGAACCTTAATGGCCAGCCTCCGCAAAACCCATCCCCTCCTTAAAATTACCAACGACGCCCTAGTTGACCTGCCTGCCCCCTCCAATATTTCAATCTGATGAAACTTTGGCTCACTCCTCGGTTTATGTCTTATCATCCAAATCCTAACAGGCCTATTTTTAGCCATGCACTATACTGCCGAGACTGCTACAGCATTTTCTTCAGTCGTGCACCTTTGCCGAGACGTCAACTACGGCTGACTAATCCGGAACATGCACGCTAACGGAGCATCTTTCTTCTTTATCTGTATTTATCTTCATATTGGTCGAGGTCTTTACTATGGCTCTTTCCTCTACAAGGAGAC----------------------------------------------------------------------GCCTGCCCGGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-GGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATGCTAACATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCTACGTTAAACTTCCCCTCTAATAGGGAAAAAACATTGTGGCTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAATCTCACAGCTGAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAAATGATCCGGCACACTGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_japonicus_5 TTAATTCAACTACAAGAACCTTAATGGCCAGCCTCCGCAAAACCCATCCCCTCCTTAAAATTACCAACGACGCCCTAGTTGACCTGCCTGCCCCCTCCAATATTTCAATCTGATGAAACTTTGGCTCACTCCTCGGTTTATGTCTTATTATCCAAATCCTAACAGGCCTATTTTTAGCCATGCACTATACTGCCGAGACTGCTACAGCATTTTCTTCGGTCGTGCACCTTTGCCGAGACGTCAACTACGGCTGACTAATCCGGAACATGCACGCTAACGGAGCATCTTTCTTCTTTATCTGTATTTATCTTCATATTGGTCGAGGTCTTTACTATGGCTCTTTCCTCTACAAGGAGAC------------------------------------------------------------------------------------CCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-GGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATGCTAACATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCTACGTTAAACTTCCCCTCTAATAGGGAAAAAACATTGTGGCTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAATCTCACAGCTAAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAAATGATCCGGCACACTGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_japonicus_8 TTGATTCAACTACAAGAACCTTAATGGCCAGCCTCCGCAAAACCCATCCCCTCCTTAAAATTACCAACGACGCCCTAGTTGACCTGCCTGCCCCCTCCAATATTTCAATCTGATGAAACTTTGGCTCACTCCTCGGTTTATGTCTTATCATCCAAATCCTAACAGGCCTATTTTTAGCCATACACTATACTGCCGAAACTGCTACAGCATTTTCTTCAGTCGTGCACCTTTGCCGAGACGTCAACTACGGCTGACTAATCCGGAACATGCACGCTAACGGAGCATCTTTCTTCTTTATCTGTATTTATCTTCATATTGGTCGAGGTCTTTACTATGGCTCTTTCCTCTACAAGGAGAC-------------------------------------------------------------------------------GTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-GGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATGCTAACATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCTACGTTAAACTTCCCCTCTAATAGGGAAAAAACATTGTGGCTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAATCTCACAGCTAAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAGATGATCCGGCACACTGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_nipponensis_1 TCAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCACCCCCTCCTAAAAATTACCAATGACGCCCTAGTTGATTTACCTGCACCCTCCAATATTTCAATCTGATGGAACTTTGGATCCCTACTTGGGCTGTGTCTTATTATCCAAATCCTTACGGGCCTCTTTTTGGCTATGCACTATACTGCTGAGACTGCTACCGCTTTTTCCTCTGTTGTTCACCTCTGCCGAGACGTTAATTACGGCTGACTAATCCGTAACATGCACGCTAACGGAGCATCTTTCTTCTTTATTTGCATTTACCTTCATATTGGCCGAGGTCT-----------------------------------------------------------------------------------------------------CCTGCCCCGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAGGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTACCATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCTACGTTAAACTTCCACTCCAAAGTGGAAAAAACATTGTAGCTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAAAGCCTCCATGTGGACCGAGGCTACTAGCCTCACAACTAAGAGCTGCAGCTCCAAGCAACAGAAATTCTGACCAGTGTGATCCGGCATAATGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_nipponensis_5 TCAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCACCCCCTCCTAAAAATTACCAATGACGCCCTAGTTGATTTACCTGCACCCTCCAATATTTCGATCTGATGAAACTTTGGATCCCTTCTTGGGCTGTGTCTTATTATCCAAATCCTTACGGGCCTCTTTTTGGCTATGCACTATACTGCTGAGACTGCTACCGCTTTTTCCTCTGTTGTTCACCTCTGCCGAGACGTTAATTACGGCTGACTAATCCGTAACATGCACGCTAACGGAGCATCTTTCTTCTTTATTTGCATTTACCTTCATATTGGCCGAGGTCTTTATTACGGCTCATTCCTGTACAAGGAAACTTGAAACATCGGCGTGGTTCTACTACTTTTAGTCATAATGACCGCTTTTGTGGGCTATGTTCTTCCC--------------GACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAGGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTACCATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCTACGTTAAACTTCCACTCCCAAGTGGAAAAAACATTGTAGCTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAAAGCCTCCATGTGGACCGAGGCTACTAGCCTCACAACTAAGAGCTGCAGCTCCAAGCAACAGAAATTCTGACCAGTATGATCCGGCATAATGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_nipponensis_7 TCAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCACCCCCTCCTAAAAATTACCAATGACGCCCTAGTTGATTTACCTGCACCCTCCAATATTTCAATCTGATGAAACTTTGGATCCCTACTTGGGCTGTGTCTTATTATCCAAATCCTTACGGGCCTCTTTTTGGCTATGCACTATACTGCTGAGACTGCTACCGCTTTTTCCTCTGTTGTTCACCTCTGCCGAGACGTTAATTACGGCTGAGTAATCCGTAACATGCACGCTAACGGAGCATCTTTCTTCTTTATTTGCATTTACCTTCATATTGG-------------------------------------------------------------------------------------------------------------GCCTGCCCGGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAGGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCCC-GTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTACCATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCTACGTTAAACTTCCACCCCAAAGTGGAAAAAACATTGTAGCTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAAAGCCTCCATGTGGACCGAGGCTACTAGCCTCACAACTAA{AG}AGCTGCAGCTCCAAGCAACAGAAATTCTGACCAGTGTGATCCGGCATAATGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_olidus_1 TTAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCATCCCCTCCTAAAAATTACCAACGACGCCCTAGTAGATTTACCTGCACCCTCCAATATTTCTATTTGATGAAACTTTGGTTCCCTTCTTGGGTTATGTCTTATTATCCAAATCCTAACAGGCCTGTTTTTGGCCATGCACTACACTGCCGAAACTGCTACGGCCTTTTCCTCCGTTGTGCACCTCTGCCGGGACGTCAACTACGGCTGACTTATCCGGAACATACATGCCAACGGAGCATCTTTCTTCTTTATCTGTATTTATCTTCATATTGGCCGAGGTCTTTACTACGGCTCCTTCCTCTATAAAGAAACTTGAAACATCGGCGTGGTCCTTCTCCTCTTAGT----------------------------------CCCGCCTGCCCGGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTAACATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCCACGTCAAACTTCCCCCTCAAAGAGGAAAAAACATTGTGACTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAAAGCCTCCATGTGGACCGAGGTTACTAACCTCACAACTAAGAGCTGCAGCTCCAAGCAACAGAAATTCTGACCAAAATGATCCGGCACAATGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_olidus_4 TTAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCATCCCCTCCTAAAAATTACCAACGACGCCCTAGTAGATTTACCTGCACCCTCCAATATTTCTATTTGATGAAACTTTGGTTCCCTTCTTGGGTTATGTCTTATTATCCAAATCCTAACAGGCCTGTTTTTGGCCATGCACTACACTGCCGAAACTGCTACGGCCTTTTCCTCCGTTGTGCACCTCTGCCGGGACGTCAACTACGGCTGACTTATCCGGAACATACATGCCAACGGAGCATCTTTCTTCTTTATCTGTATTTATCTTCATATTGGCCGAGGTCTTTACTACGGCTCCTTCCTCTATAAAGAAACTTGAAACATCGGCGTGG---------------------------------------------------CCGCCTGCCCGGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTAACATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCCACGTCAAACTTCCCCCTCAAAGAGGAAAAAACATTGTGACTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAAAGCCTCCATGTGGACCGAGGTTACTAACCTCACAACTAAGAGCTGCAGCTCCAAGCAACAGAAATTCTGACCAAAATGATCCGGCACAATGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_pretiosus_1 TTAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCATCCCCTCCTGAAAATTACCAACGACGCTCTTGTTGATCTGCCTGCGCCCTCCAATATTTCTATCTGATGAAACTTTGGCTCCCTCCTTGGACTATGTCTTATTATTCAAATCCTCACAGGCCTATTCCTAGCCATGCACTACACTGCCGAAACTGCTACGGCATTTTCTTCTGTGGTACACCTATGCCGAGACGTTAATTACGGGTGACTAATCCGGAACATGCACGCTAACGGGGCATCTTTCTTCTTTATTTGTATTTATGTTCATATTGGCCGGGGTCT------------------------------------------------------------------------------------------------------------GGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTAGCATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGGCAGCCCACGTCAAACTTCCCCTTTCAAGGGGCAAAAACATTGTGATTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAGCCTCACAACTAAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAAATGATCCGGCACAGCGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_pretiosus_BMS2 TTAATTCAACTACAAGAACC{CG}TAATGGCCAACCTTCGGAAAACCCATCCCCTCCTGAAAATTACCAACGACGCTCTTGTTGATCTGCCTGCGCCCTCCAATATTTCTATCTGA?GAAACTTTGGCTCCCTCCTTGGACTATGTCTTATTATTCAAATCCTCACAGGCCTATTCCTAGCCATGCACTACACTGCCGAAACTGCTACGGCATTTTCTTCTGTGGTACACCTATGCCGAGACGTTAATTACGGGTGACTAATCCGGAACATGCACGCTAACGGAGCATC-------------------------------------------------------------------------------------------------------------------------------------------CCCGCCTGCCCGGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTAGCATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGGCAGCCCACGCCAAACTTCCCCTTTCAAGGGGCAAAAACATTGTGATTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAGCCTCACAACTAAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAAATGATCCGGCACAGCGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_pretiosus_JB2 TTAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCATCCCCTCCTGAAAATTACCAACGACGCTCTTGTTGATCTGCCTGCGCCCTCCAATATTTCTATCTGATGAAACTTTGGCTCCCTCCTTGGACTATGTCTTATTATTCAAATCCTCACAGGCCTATTCCTAGCCATACACTACACTGCCGAAACTGCTACGGCATTTTCTTCTGTGGTACACCTATGCCGAGACGTTAATTACGGGTGACTAATCCGGAACATGCACGCTAACGGAGCATCTTTCTTCTTTATTTGTATTTATGTTCATATTGGCCGGGGT----------------------------------------------------------------------------------------------------CCGCCTGCCCGGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTAACATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGGCAGCCCACGTCAAACTTCCCCTTTCAAGGGGCAAAAACATTGTGATTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAGCCTCACAACTAAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAAATGATCCGGCACAGCGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_transpacificus_1 TTAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCATCCCCTCCTGAAAATTACCAACGACGCTCTTGTTGATCTGCCTGCACCCTCCAATATTTCTATCTGATGAAACTTTGGCTCCCTCCTTGGACTATGTCTTATTATTCAAATCCTCACGGGCCTATTCCTAGCCATGCACTACACTGCCGAGACTGCTACAGCATTTTCTTCTGTAGTACACTTATGCCGGGACGTTAATTACGGGTGACTAATCCGGAACATGCACGCTAACGGAGCATCTTTCTTCTTTATTTGTATTTATG---------------------------------------------------------------------------------------------------------------------CCGCCTGCCCGGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTAGCATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGGCAGCCCACGTCAAACTTCCCCTTCCAAGGGGCAAAAACATTGTGATTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAGCCTCACAACTAAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAAATGATCCGGCACAGCGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_transpacificus_3 TTAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCATCCCCTCCTGAAAATTACCAACGACGCTCTTGTTGATCTGCCTGCACCCTCCAATATTTCTATCTGATGAAACTTTGGCTCCCTCCTTGGACTATGTCTTATTATTCAAATCCTCACAGGCCTATTCCTAGCCATGCACTACACTGCCGAGACTGCTACAGCATTTTCTTCTGTAGTACACTTATGCCGGGACGTTAATTACGGGTGACTAATCCGGAACATGCACGCTAACGGAGCATCTTTCTTCTTTATTTGTATTTATGA------------------------------------------------------------------------------------------------------------------------------------CCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTAGCATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCCACGTCAAACTTCCCCTTCCAAGGGGCAAAAACATTGTGATTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAGCCTCACAACTAAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAAATGATCCGGCACAGCGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Hypomesus_transpacificus_8 TTAATTCAACTACAAGAACCCTAATGGCCAACCTTCGGAAAACCCATCCCCTCCTGAAAATTACCAACGACGCTCTTGTTGATCTGCCTGCACCCTCCAATATTTCTATCTGATGAAACTTTGGCTCCCTCCTTGGA{AC}TATGTCTTATTATTCAAATCCTCACAGGCCTATTCCTAGCCATGCACTACACTGCCGAGACTGCTACAGCATTTTCTTCTGTAGTACACTTATGCCGGGACGTTAATTACGGGTGA?TAATCCGGAACATGCACGCTAACGGAGCATCTTTCTTCTTTATTTGTATTTA----------------------------------------------------------------------------------------------------------------------------------GTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-AGTCAATGAAATTGATCTCCCCGTGCAGAAGCGGGGATACTAGCATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGGCAGCCCACGTCAAACTTCCCCTTCCAAGGGGCAAAAACATTGTGATTCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAGCCTCACAACTAAGAGCTGCAGCTCCAAGCACCAGAAATTCTGACCAAAATGATCCGGCACAGCGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT Mallotus_villosus_TC2_outgroup TTAATTCAACTACAAGAACCCTAATGGCCAGCCTTCGGAAAACCCACCCCCTCCTGAAAATTACCAATGACGCCCTAGTTGATCTCCCTGCACCCTCCAACATTTCTATCTGGTGAAACTTTGGCTCTCTTCTTGGGCTTTGCCTCATTATTCAGATTCTTACAGGCCTATTTCTGGCCATGCATTACACTGCTGAGACTGCCACAGCATTCTCCTCCGTAGTACACCTATGCCGTGACGTAAATTATGGGTGACTAATCCGAAACATGCATGCTAACGGAGCATCTTTCTTCTTTATTTGCATTTACCTCCATATCGGCCGAGGCCTTTACTATGGCTCTTTCCTTTATAAAGAGACTTGAAACGTCGGCGTAGTCCTT---------------------------------------------CCCGCCTGCCCGGTGACCCTGGGTTAAACGGCCGCGGTATTTTAACCGTGCGAAGGTAGCGCAATCACTTGTCCTTTAAATGAAGACCTGTATGAATGGCTAGACGAGGGCTTAGCTGTCTCCTCCCCCC-GGTCAATGAAATTGATCCCCCCGTGCAGAAGCGGGGATAATTACATAAGACGAGAAGACCCTATGGAGCTTTAGACACTAGACAGCCCACGTTAAAATTACCCTTCAGCGGGCGATAAACATTGTGACCCCTGTCTCTCCTGTCTTCGGTTGGGGCGACCGCGGAGGATAAAAGAGCCTCCATGTGGACCGAGGTTACTAACCTCACAACTAAGAGCTGCAGCTCCAAGCAACAGAAATTCTGACCAAAATGATCCGGCACA-TGCCGATTAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCCTATCGACGAGGGGGTTTACGACCTCGATGTTGGATCAGGACATCCTATTGGTGCAGCCGCTAATAAGGGTTCGTTTGTTCAACGATTAAAGTCCT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'Fig4a_mtDNA_MLtree') = N: 426-973, 1: 3-425\3, 2: 1-426\3, 3: 2-427\3; CODONPOSSET CodonPositions (CHARACTERS = 'Fig4a_mtDNA_MLtree') = N: 426-973, 1: 3-425\3, 2: 1-426\3, 3: 2-427\3; END; [ The following blocks are output data for analysis step 3699 ] BEGIN TREES; TITLE Tb8472; LINK TAXA = TaxaForAnalysisStep3699; TREE Fig._4a = [&R] ((((Hypomesus_pretiosus_BMS2,Hypomesus_pretiosus_1,Hypomesus_pretiosus_JB2)Hypomesus_pretiosus,(Hypomesus_transpacificus_8,Hypomesus_transpacificus_3,Hypomesus_transpacificus_1)Hypomesus_transpacificus),((Hypomesus_japonicus_5,(Hypomesus_japonicus_8,Hypomesus_japonicus_10))Hypomesus_japonicus,((Hypomesus_olidus_1,Hypomesus_olidus_4)Hypomesus_olidus,((Hypomesus_nipponensis_1,Hypomesus_nipponensis_7),Hypomesus_nipponensis_5)Hypomesus_nipponensis)))Hypomesus,Mallotus_villosus_TC2_outgroup); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4871] END;