#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 13, 2026; 15:09 GMT TreeBASE (cc) 1994-2008 Study reference: Sotome K., Hsttori T., Ota Y., & Kakishima M. 2008. Second report of Polyporus longiporus and its phylogenetic position. Mycoscience, 50(6): 415-420. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10049] [ The following blocks are input data for analysis step 5136 ] BEGIN TAXA; TITLE TaxaForAnalysisStep5136; DIMENSIONS NTAX=18; TAXLABELS Ganoderma_lucidum Lentinus_polychrous Lentinus_squarrosulus Lentinus_tigrinus_AF516517 Lentinus_tigrinus_AF516520 Lentinus_tigrinus_MUCL22821 Perenniporia_tephropora Polyporus_arcularius_WD2138 Polyporus_arcularius_WD2359 Polyporus_brumalis_WD2371 Polyporus_brumalis_WD2372 Polyporus_ciliatus_AB070878 Polyporus_ciliatus_AB070880 Polyporus_ciliatus_AB070882 Polyporus_longiporus_229479 Polyporus_longiporus_WD2391 Polyporus_longiporus_WD2579 Polyporus_tricholoma ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4699] TITLE ITS; LINK TAXA = TaxaForAnalysisStep5136; DIMENSIONS NCHAR=518; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ganoderma_lucidum TCATCCACTCTACACCTGTGCACTTACTGTGGGCTTCAGA--TTGCGAGGCACGCTCTT------------TACCGGGCTTGCGGAG---CATATCTGTGCCTGCGTTT-ATCACAAACTC-TATA-AAGTAACAGAATGTGTATTGCGATGTAACACATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATCTTCAACCTACAAGC-TTTT------GTGGT--TTGTAGGCTTGGACTTGGAGGC--TTGTCGGCCGTT-------ATCGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCC-TTGCGGATCGGCTCTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGTT----TGG--CGAGCTTCTAACC Lentinus_polychrous TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAAGCGAG?AGGGCCCCTTGCGGGGTCAGTCTCGTCGTAGT--AGTGACTGGGCCCACGTCC-ACTATAAACTC-TTAA-AAGTATCAGAATGTGTATTGCGATGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACGGG-TTCTTAACCGGACTT--GCTTAGGCTTGGACTTGGAGGCT-TTGTCGGCTTGCTTA--TGTCGAGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTTGCGGATCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTAATGG--CCAGCTTCTAATC Lentinus_squarrosulus TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAAGCGAGAAAAGGGCCTTCACGGGCTTTTTCTTGCCTAGT--TGTTACTGGGCCTACGTTTCACTACAAACAC-TTATAAAGTATCAGAATGTGTATTGCGATGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACGGG-TTCTTAACGGGACTT--GCTTAGGCTTGGACTTGGAGGTTCTTGTCGGCTTGCTTCAATGTCAAGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTGTGCGGATCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTATAGG--CCAGCTTCTAGTC Lentinus_tigrinus_AF516517 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCAAGGGC-------------------GTTTCTTACGCCGGAGT--TGTGACTGGGCCTACGTTT-ACTACAAACTC-TTAC-AAGTATCAGAATGTGTATTGCGATGTAACGCATCTCTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACGGG-TTCTTAACGGGACTT--GCTTAGGCTTGGACTTGGAGGCTCTTGTCGGCTTGCTTT--CGTCAAGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCTTTGCGGATCCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTAATGGGACTAGCTTCTAACC Lentinus_tigrinus_AF516520 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCTATGGCG--------------------TTCTTACGTCGTGGT--TGTTACTGGGCCTGCGTTT-ACTACAAACTC-TTAT-AAGTATCAGAATGTGTATTGCGATGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACGGG-TTCTTAACGGGACTT--GCTTAGGCTTGGACTTGGAGGCTTTTGTCGGCTTGCTTT--CGCATGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCTTTGCGGATCTGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGGTGAAGCGTTTTAATGG-ACTAGCTTCTAATC Lentinus_tigrinus_MUCL22821 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCAAGGGC-------------------GTTTCTTACGCCGGAGT--TGTGACTGGGCCTACGTTT-ACTACAAACTC-TTAC-AAGTATCAGAATGTGTATTGCGATGTAACGCATCTCTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACGGG-TTCTTAACGGGACTT--GCTTAGGCTTGGACTTGGAGGCTCTTGTCGGCTTGCTTT--CGTCAAGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCTTTGCGGATCCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTAATGGGACTAGCTTCTAACC Perenniporia_tephropora TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGA--TGGCGTAGTGAGCCTTT--------------ACGGGCTTGTGAA----AGCATCTGTGCCTGCGTTT-ATTATAAACTC-TTAT-AAGTAACAGAATGTGTATTGCGATGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATCATCAACCTATAAAC-CTTT-----GTGGGT--TTGTAGGCTTGGATTTGGAGGC--TTGTCGGCCT---------AACAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCC-TTGCGGATCGGCTCTCGGTGTGATAATTGTCTACGCCGCGACCG-TGAAGCGTT----TGG--CGAGCTTCTAATC Polyporus_arcularius_WD2138 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTTT------------AATCGCTCTCGCCGAGT--TGTTACTGGGCCTACGTTT-ATCACAAACTC-TTAA-AAGTATCAGAATGT-AAACGCG-TCTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACAAG-TTCTTAACGGGGCTT--GCTTAGGCTTGGACTTGGAGGC--TTGTCGGCTCTT-----AGC--AGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCC-TTGCGGATCGGCTCACGGTGTGATAATTATCTGCGCCGCGACCGTTGAAGCG-TTTAATGG--CCAGCTTCTAATC Polyporus_arcularius_WD2359 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGTTT------------AATCGCTCTCGCCGAGT--TGTTACTGGGCCTACGTTT-ATCACAAACTC-TTAA-AAGTATCAGAATGT-AAACGCG-TCTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACAAG-TTCTTAACGGGGCTT--GCTTAGGCTTGGACTTGGAGGC--TTGTCGGCTCTT-----AGC--AGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCC-TTGCGGATCGGCTCACGGTGTGATAATTATCTGCGCCGCGACCGTTGAAGCG-TTTAATGG--CCAGCTTCTAATC Polyporus_brumalis_WD2371 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGGGGGCTT------------AATCGCCTTCGCCGAGT--TGTTACTGGGCCTACGTTT-ACCACAAACAC-TTTA-AAGTAACAGAATGT-AATCGCG-TCTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACAAG-TTCTTAACCGGACTT--GCTTAGGCTTGGACTTGGAGGC--TTGTCGGCTCTT-----AGC--AGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCC-TTGCGGATCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTAATGG--CCAGCTTCTAATC Polyporus_brumalis_WD2372 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGGGGGCTT------------AATCGCCTTCGCCGAGT--TGTTACTGGGCCTACGTTT-ACCACAAACAC-TTTA-AAGTAACAGAATGT-AATCGCG-TCTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAACAAG-TTCTTAACCGGACTT--GCTTAGGCTTGGACTTGGAGGC--TTGTCGGCTCTT-----AGC--AGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCC-TTGCGGATCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTAATGG--CCAGCTTCTAATC Polyporus_ciliatus_AB070878 TCATCCACTCTACACCTGTGCACTTACTGTAGGCTTCAGGAGCTTCGAAGCGAGGG{ACT}TT------------AATCGCTCTCGCCGAGT--TGTGACTGGGCCTACGTTT-ACCACAAACTC-TTAT-AAGTAACAGAATGTTAATCGCG-TGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAG{ACT}GTCATGAAATTCTCAACCCAACAAG-TTCTTAACGGGACTTTGCTTGTGGCTTGGACTTGGAGGT--TTGTCGGCTCATT----AGC--AGTCGGCTCCTCTCAAATGCATTA{AG}CTTGGTTCC-TTGCGGATCGGCTCACGGTGTGATAATTGTCTA{AC}GCCGCGACCGTTGAAGCG-TTTAATGG--CCAGCTTCTAATC Polyporus_ciliatus_AB070880 TCATCCACTCTACACCTGTGCACTTACTGTAGGCTTCAGGAGCTTCGAAGCGAGGGCTT------------AATCGCTCTCGCCGAGT--TGTGACTGGGCCTACGTTT-ACCACAAACTCTTTAT-AAGTAACAGAATGTTAATCGCG-TGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAG{ACT}GAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTG{ACT}TTGAGAG{CT}CATGAAATTCTCAACCCAACAAG-{ACT}TCTTAACGGGACTTTGCTTGTGGCTTGGACTTGGAGGC--TTG{ACT}CGGCTCATT----AGC--AGTCGGCTCCTCTCAAATGCATTA{AG}CTTGGTTCC-TTGCGGATCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCG-TTTAATGG--CCAGCTTCTAATC Polyporus_ciliatus_AB070882 TCATCCACTCTACACCTGTGCACTTACTGTAGGCTTCAGGAGCTTCGAAGCGAGGG{ACT}TT------------AATCGCTCTCGCCGAG{ACT}TGTGTGA{CG}TGGGCCTACGTTT-ACCACAAACTC-TTAT-AAGTAACAGAATGTTAATCGCG-TGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG{ACT}ATTCCGAGGAGCATGCCTG{ACT}TTGAG{ACT}G{ACT}CATGAAATTCTCAACCCAACAAG-{ACT}TCTTAACGGGACTTTGCTTGTGGCTTGGACTTGGAGGA--TTG{ACT}CGGCTCATT----AGC--AGTCGGCTCCTCTCAAATGCATTAACTTGGTTCC-TTGCGGATCGGCTCACGGTG{ACT}GATAATTGTCTACGCCGCGACCGTTGAAGCG-TTTAATGG--CCAGCTTCTAATC Polyporus_longiporus_229479 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGCTT------------AATCGCTCTCGCCGAGT--TGTTACTGGGCCTACGTTC-ACCACAAACAC-TTAT-AAGTAACAGAATGTTTATCGCG-TGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCCAACAAGTTTCTTAACGGGACTT--GCTGAGGCTTGGACTTGGAGGC--TTGTCGGCTCTC-----AGCAGAGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTTGCGGATCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTAATGG--CCAGCTTCTAATC Polyporus_longiporus_WD2391 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGCTT------------AATCGCTCTCGCCGAGT--TGTTACTGGGCCTACGTTC-ACCACAAACAC-TTAT-AAGTAACAGAATGTTTATCGCG-TGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCCAACAAGTTTCTTAACGGGACTT--GCTGAGGCTTGGACTTGGAGGC--TTGTCGGCTCTT-----AGCAGAGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTTGCGGATCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTAATGG--CCAGCTTCTAATC Polyporus_longiporus_WD2579 TCATCCACTCTACACCTGTGCACTTACTGTGGGTTTCAGGAGCTTCGAAGCGAGGGCTT------------AATCGCTCTCGCCGAGT--TGTTACTGGGCCTACGTTC-ACCACAAACAC-TTAT-AAGTAACAGAATGTTTATCGCG-TGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCCAACAAGTTTCTTAACGGGACTT--GCTGAGGCTTGGACTTGGAGGC--TTGTCGGCTCTT-----AGCAGAGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTTGCGGATCGGCTCACGGTGTGATAATTGTCTACGCCGCGACCGTTGAAGCGTTTTAATGG--CCAGCTTCTAATC Polyporus_tricholoma TCATCCACTCTACACCTGTGCACTTACTGTAGGTTTCAGGAGCTTCACGGGCTTTCATT--------------------AGTCCGGGT--TGTAACTGGGCTTACGTTT-ACTACAAACTC-TTATAAAGTATCAGAATGTGTATTGCGATGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAACTCTCAACCTAACAAG-TTTGTAAC-GAGCTT--GCTTAGGCTTGGACTTGGAGGC--TTGCCGGCTGTT-----TACCCAGTCGACTCCTCTCAAATGCATTAGCTTGGTTCC-TTGCGAATCGGCTCACGGTGTGATAGTTGTCTACGCCGCGACCG-TGAAGCG-TTTATTGG--CCAGCTTCTAATC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS) = N: 1-518; CODONPOSSET CodonPositions (CHARACTERS = ITS) = N: 1-518; END; [ The following blocks are output data for analysis step 5136 ] BEGIN TREES; TITLE Tb10544; LINK TAXA = TaxaForAnalysisStep5136; TREE Fig._1 = [&R] ((Perenniporia_tephropora,Ganoderma_lucidum),((((Polyporus_arcularius_WD2138,Polyporus_arcularius_WD2359),(Polyporus_brumalis_WD2371,Polyporus_brumalis_WD2372)),((Polyporus_longiporus_WD2579,Polyporus_longiporus_WD2391,Polyporus_longiporus_229479),(Polyporus_ciliatus_AB070882,(Polyporus_ciliatus_AB070878,Polyporus_ciliatus_AB070880)))),(Polyporus_tricholoma,(Lentinus_squarrosulus,(Lentinus_polychrous,(Lentinus_tigrinus_AF516520,(Lentinus_tigrinus_MUCL22821,Lentinus_tigrinus_AF516517))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6099] END;