#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 15, 2026; 7:55 GMT TreeBASE (cc) 1994-2008 Study reference: Lebel T., & Syme A.E. 2011. Sequestrate Agaricus and Macrolepiota from Australia: new species and combinations and their position in a calibrated phylogeny. Mycologia , . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11712] [ The following blocks are input data for analysis step 7593 ] BEGIN TAXA; TITLE TaxaForAnalysisStep7593; DIMENSIONS NTAX=87; TAXLABELS Agaricus_abruptibulbus Agaricus_albolutescens Agaricus_arvensis Agaricus_augustus Agaricus_bernardii Agaricus_bisporus Agaricus_bitorquis Agaricus_boisseletii Agaricus_bresadolianus Agaricus_californicus Agaricus_campestris Agaricus_comtulus Agaricus_cupressicola Agaricus_curcumans_JF495047 Agaricus_curcumans_JF495048 Agaricus_devoniensis Agaricus_dimunitivus Agaricus_eburneocanus_JF495062 Agaricus_endoxanthus Agaricus_erythrosarx_JF495069 Agaricus_fissuratus Agaricus_freirei Agaricus_fuscofibrillosus_AY484684 Agaricus_fuscovelatus Agaricus_gennadii Agaricus_hondensis Agaricus_impudicus Agaricus_inapertus Agaricus_inilleasper Agaricus_iodosmus Agaricus_langei Agaricus_lilaceps Agaricus_macrosporus Agaricus_melanosporus_JF495042 Agaricus_nivescens Agaricus_pattersonae Agaricus_phaeolepidotus Agaricus_placomyces Agaricus_pocillator Agaricus_pseudopratensis Agaricus_semotus Agaricus_silvaticus Agaricus_sp.A_JF495044 Agaricus_sp.A_JF495045 Agaricus_sp.B_JF495060 Agaricus_sp.C_JF495066 Agaricus_sp.D_JF495057 Agaricus_subfloccosus Agaricus_subrufescens Agaricus_subrutilescens Agaricus_wariatodes Agaricus_wariatodes_JF495053 Agaricus_xanthodermus Barcheria_willisiana_JF495035 Barcheria_willisiana_JF495036 Chlorophllum_nothorachodes Chlorophllum_olivieri Chlorophyllum_agaricoides Chlorophyllum_alborubescens Chlorophyllum_brunneum Chlorophyllum_globosum Chlorophyllum_hortense Chlorophyllum_molybdites Chlorophyllum_rachodes Clarkeinda_trachodes Coniolepiota_spongodes Eriocybe_chionea Heinemannomyces_splendissimUS Macrolepiota_clelandii Macrolepiota_colombiana Macrolepiota_detersa Macrolepiota_detersa_AF482851 Macrolepiota_dolichaula Macrolepiota_dolichaula_AY085193 Macrolepiota_eucharis Macrolepiota_excoriata Macrolepiota_fuliginosa Macrolepiota_heimii Macrolepiota_konradii_ Macrolepiota_neomastoidea Macrolepiota_procera Macrolepiota_rhodosperma Macrolepiota_subsquarrosa Macrolepiota_turbinata_JF495071 Macrolepiota_turbinata_JF495076 Macrolepiota_velosa Macrolepiota_vinaceofibrillosa ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M11085] TITLE ITS_taxa_for_calibration; LINK TAXA = TaxaForAnalysisStep7593; DIMENSIONS NCHAR=2; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX Agaricus_abruptibulbus -- Agaricus_albolutescens -- Agaricus_arvensis -- Agaricus_augustus -- Agaricus_bernardii -- Agaricus_bisporus -- Agaricus_bitorquis -- Agaricus_boisseletii -- Agaricus_bresadolianus -- Agaricus_californicus -- Agaricus_campestris -- Agaricus_comtulus -- Agaricus_cupressicola -- Agaricus_curcumans_JF495047 -- Agaricus_curcumans_JF495048 -- Agaricus_devoniensis -- Agaricus_dimunitivus -- Agaricus_eburneocanus_JF495062 -- Agaricus_endoxanthus -- Agaricus_erythrosarx_JF495069 -- Agaricus_fissuratus -- Agaricus_freirei -- Agaricus_fuscofibrillosus_AY484684 -- Agaricus_fuscovelatus -- Agaricus_gennadii -- Agaricus_hondensis -- Agaricus_impudicus -- Agaricus_inapertus -- Agaricus_inilleasper -- Agaricus_iodosmus -- Agaricus_langei -- Agaricus_lilaceps -- Agaricus_macrosporus -- Agaricus_melanosporus_JF495042 -- Agaricus_nivescens -- Agaricus_pattersonae -- Agaricus_phaeolepidotus -- Agaricus_placomyces -- Agaricus_pocillator -- Agaricus_pseudopratensis -- Agaricus_semotus -- Agaricus_silvaticus -- Agaricus_sp.A_JF495044 -- Agaricus_sp.A_JF495045 -- Agaricus_sp.B_JF495060 -- Agaricus_sp.C_JF495066 -- Agaricus_sp.D_JF495057 -- Agaricus_subfloccosus -- Agaricus_subrufescens -- Agaricus_subrutilescens -- Agaricus_wariatodes -- Agaricus_wariatodes_JF495053 -- Agaricus_xanthodermus -- Barcheria_willisiana_JF495035 -- Barcheria_willisiana_JF495036 -- Chlorophllum_nothorachodes -- Chlorophllum_olivieri -- Chlorophyllum_agaricoides -- Chlorophyllum_alborubescens -- Chlorophyllum_brunneum -- Chlorophyllum_globosum -- Chlorophyllum_hortense -- Chlorophyllum_molybdites -- Chlorophyllum_rachodes -- Clarkeinda_trachodes -- Coniolepiota_spongodes -- Eriocybe_chionea -- Heinemannomyces_splendissimUS -- Macrolepiota_clelandii -- Macrolepiota_colombiana -- Macrolepiota_detersa -- Macrolepiota_detersa_AF482851 -- Macrolepiota_dolichaula -- Macrolepiota_dolichaula_AY085193 -- Macrolepiota_eucharis -- Macrolepiota_excoriata -- Macrolepiota_fuliginosa -- Macrolepiota_heimii -- Macrolepiota_konradii_ -- Macrolepiota_neomastoidea -- Macrolepiota_procera -- Macrolepiota_rhodosperma -- Macrolepiota_subsquarrosa -- Macrolepiota_turbinata_JF495071 -- Macrolepiota_turbinata_JF495076 -- Macrolepiota_velosa -- Macrolepiota_vinaceofibrillosa -- ; END; [ The following blocks are output data for analysis step 7593 ] BEGIN TREES; TITLE Calibrated_ITS_result; LINK TAXA = TaxaForAnalysisStep7593; TREE ITS_calibrated = [&R] ((((((((((Macrolepiota_turbinata_JF495071:1.7893990458545947,Macrolepiota_turbinata_JF495076:1.7893990458545947):3.9371023937037024,(Macrolepiota_detersa:1.006509840598078,Macrolepiota_detersa_AF482851:1.006509840598078):4.71999159896022):3.3580151065856896,(Macrolepiota_dolichaula:0.8783596144109265,Macrolepiota_dolichaula_AY085193:0.8783596144109265):8.20615693173307):3.087522587372904,Macrolepiota_vinaceofibrillosa:12.172039133516913):5.338469736359471,Macrolepiota_procera:17.51050886987636):1.9099022090161561,((Macrolepiota_rhodosperma:1.6170271560971454,Macrolepiota_fuliginosa:1.6170271560971454):12.181399789762276,Macrolepiota_colombiana:13.798426945859426):5.62198413303312):4.430039279749373,Macrolepiota_clelandii:23.85045035864188):4.802047583696087,((Macrolepiota_excoriata:0.9680272829281689,Macrolepiota_heimii:0.9680272829281689):5.195895324774791,(Macrolepiota_konradii_:0.720243679399756,Macrolepiota_subsquarrosa:0.720243679399756):5.443678928303196):22.488575334635):6.146731153871556,(Macrolepiota_velosa:9.15417107145535,Macrolepiota_eucharis:9.15417107145535):25.645058024754213):47.747165023481905,(((Barcheria_willisiana_JF495035:2.6646273590033873,Barcheria_willisiana_JF495036:2.6646273590033873):62.69867019789018,(((Agaricus_melanosporus_JF495042:34.257763005223765,(((((((((Agaricus_curcumans_JF495048:3.7512455758860517,Agaricus_curcumans_JF495047:3.7512455758860517):3.5504318745367205,(Agaricus_wariatodes_JF495053:1.1074972645198737,Agaricus_wariatodes:1.1074972645198737):6.194180185902901):2.8134528774032814,(Agaricus_sp.D_JF495057:5.393004976672821,Agaricus_dimunitivus:5.39300497667282):4.7221253511532275):3.0551581316882395,Agaricus_semotus:13.170288459514293):3.9588634916904937,(((Agaricus_abruptibulbus:3.8189580895595268,Agaricus_subrufescens:3.8189580895595268):3.154693225878949,Agaricus_arvensis:6.9736513154384765):3.314897911808546,(Agaricus_augustus:7.861097994156622,((Agaricus_fissuratus:4.739867501891081,(Agaricus_nivescens:3.047161330686713,(Agaricus_albolutescens:1.7375260757038524,Agaricus_inapertus:1.7375260757038524):1.3096352549828616):1.6927061712043718):2.0613780414378278,(Agaricus_macrosporus:5.475732332751244,(Agaricus_sp.B_JF495060:3.4822444100682577,Agaricus_eburneocanus_JF495062:3.4822444100682572):1.99348792268299):1.325513210577662):1.0598524508277238):2.427451233090399):6.840602723957762):2.33900815670842,Agaricus_comtulus:19.46816010791324):3.7877444942982734,(Agaricus_subrutilescens:17.492750924535606,Agaricus_bresadolianus:17.492750924535628):5.763153677675817):4.097933876152716,Agaricus_fuscofibrillosus_AY484684:27.353838478364192):3.0864246385425247,((((Agaricus_californicus:10.236574914196192,Agaricus_campestris:10.236574914196192):5.30377267507882,(Agaricus_inilleasper:9.793285359644955,Agaricus_langei:9.793285359644955):5.747062229630069):5.191977136195733,(Agaricus_sp.A_JF495044:0.6542143684996431,Agaricus_sp.A_JF495045:0.6542143684996431):20.07811035697111):6.666289018433574,(((Agaricus_lilaceps:12.956245907152503,((Agaricus_erythrosarx_JF495069:5.884647590953465,Agaricus_sp.C_JF495066:5.884647590953465):3.8341531545442535,(Agaricus_pattersonae:5.593221526707124,Agaricus_fuscovelatus:5.593221526707123):4.125579218790603):3.237445161654785):6.184982557506672,Agaricus_boisseletii:19.14122846465919):5.756118531163512,(((Agaricus_gennadii:11.875449354103322,Agaricus_bernardii:11.875449354103322):8.852585718655408,(((Agaricus_phaeolepidotus:10.37094362548177,(Agaricus_freirei:6.458731938828066,Agaricus_hondensis:6.458731938828068):3.91221168665371):4.892594949779674,(Agaricus_pseudopratensis:12.508771852027744,((Agaricus_endoxanthus:5.081391752686322,(Agaricus_iodosmus:3.2262334576561673,(Agaricus_placomyces:2.1997952011615958,Agaricus_xanthodermus:2.199795201161595):1.0264382564945738):1.8551582950301593):2.854485497246108,Agaricus_pocillator:7.935877249932431):4.572894602095337):2.754766723233688):3.306515584676763,(((Agaricus_bisporus:4.178779655226083,Agaricus_subfloccosus:4.178779655226083):6.464394353620836,(Agaricus_bitorquis:8.580502507171715,(Agaricus_impudicus:6.316017197322809,Agaricus_devoniensis:6.31601719732281):2.264485309848914):2.062671501675199):1.7411674272898754,Agaricus_cupressicola:12.384341436136788):6.185712723801428):2.1579809128205305):0.8748860556072025,Agaricus_silvaticus:21.602921128365946):3.2944258674567237):2.501266748081658):3.0416493730023717):3.817499888317027):12.216106170495287,(Clarkeinda_trachodes:40.475105491192814,Heinemannomyces_splendissimUS:40.475105491192814):5.998763684526189):4.544324869393435,(Coniolepiota_spongodes:29.397583896846378,Eriocybe_chionea:29.397583896846378):21.62061014826604):14.34510351178109):7.902112986713163,(((Chlorophyllum_brunneum:19.76949995158656,(Chlorophllum_olivieri:11.878066402070536,Chlorophyllum_rachodes:11.878066402070537):7.891433549516044):11.361512361292895,(Chlorophyllum_hortense:1.5093688883789498,Chlorophyllum_alborubescens:1.5093688883789498):29.62164342450052):10.379378548230616,(((Chlorophyllum_molybdites:5.383173134558537,Chlorophyllum_globosum:5.383173134558537):8.500329642832444,Chlorophyllum_agaricoides:13.88350277739099):17.212034308533365,(Chlorophllum_nothorachodes:19.993390441399818,Macrolepiota_neomastoidea:19.993390441399825):11.102146644524588):10.414853775185676):31.75501968249666):9.28098357608475); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50211] END;