#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 09, 2026; 16:23 GMT TreeBASE (cc) 1994-2008 Study reference: Lohtander K., Kllersj M., Moberg R., & Tehler A. 2000. The family Physciaceae in Fennoscandia: phylogeny inferred from ITS sequences. Mycologia, 92(4): 728-735. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S646] [ The following blocks are input data for analysis step 966 ] BEGIN TAXA; TITLE TaxaForAnalysisStep966; DIMENSIONS NTAX=54; TAXLABELS Amandinea_punctata Anaptychia_ciliaris_301 Anaptychia_ciliaris_498 Anaptychia_runcinata Buellia_alboatra_5345 Buellia_alboatra_8043 Buellia_disciformis Dimaelena_oreina Heterodermia_speciosa Hyperphyscia_adglutinata Mobergia_calculiformis Phaeophyscia_ciliata_7892 Phaeophyscia_ciliata_7904 Phaeophyscia_constipata Phaeophyscia_endococcina_408 Phaeophyscia_endococcina_4824 Phaeophyscia_endophoenica_4408 Phaeophyscia_nigricans Phaeophyscia_orbicularis_325 Phaeophyscia_orbicularis_7893 Phaeophyscia_sciastra_1995_Löfgren Phaeophyscia_sciastra_1995_Myllys Phaerrhiza_nimbosa Physcia_adscendens_381 Physcia_adscendens_Myllys Physcia_aipolia_var._aipolia_314 Physcia_aipolia_var._aipolia_7894a Physcia_aipolia_var._aipolia_7894c Physcia_aipolia_var._alnophila_380 Physcia_aipolia_var._alnophila_399 Physcia_caesia_12019 Physcia_caesia_346 Physcia_dimidiata_var._ornata_6663 Physcia_dubia_12016 Physcia_dubia_401 Physcia_leptalea_12031 Physcia_leptalea_12034 Physcia_magnussonii Physcia_stellaris_12009 Physcia_stellaris_453 Physcia_tenella_var._marina_8050 Physcia_tenella_var._marina_8057 Physcia_tenella_var._tenella_311 Physcia_tenella_var._tenella_Myllys Physconia_detersa_306 Physconia_distorta_12036 Physconia_distorta_313 Physconia_enteroxantha Physconia_grisea Physconia_muscigena Physconia_perisidiosa Rinodina_turfacea Xanthoria_parietina Xanthoria_sorediata ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2590] TITLE ITS; LINK TAXA = TaxaForAnalysisStep966; DIMENSIONS NCHAR=599; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Amandinea_punctata ATCATTACCGAGAGA-----------CGG----GGT------CTAA-CCGGCCCCA-CTCT-TCACCCGTGTATACCT--ACCA-TGTTGCTTTGGCGGGC--CCCAGGGCTCTAAGCCTGCGCCGGTCGGAGGCCGTCCGTGCCTCTTCCG-GCGAGCGCTCGCG-----------------------AAGGCCCTTCAAACTCTTGTT--TTAGTGTCGTCCGAG--TAAAAAACCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCA-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGC-TATGGGTCT-CGCCCCC-----G---CGGTGGGCCCGAAATTCAGTGGCGGTCCGAC-GAGACTCCGAGCGT-AGTAAGA--TTTC-ATATCCCGCTA-TGGAA-CTCTCGGCTGGACCCG----CCAGCAACCCAACTATAT????????????????????????? Anaptychia_ciliaris_301 ?????????????????????????????----GGT------CTAA-CCGGCCCCAACTCT-TCACCCCTGTTTACCCA-CATCATGTTGCTTCCGCGTGA-CTGCCGGCACTGTCGCTTTCGATGAGAGCAGTAATTCGGGCTGACCAGAC-GTGAGAGGCCTTTCAAACCCGGGCTGATCAGACGTGAGACGCCCTTCAAACCCTGTCT-TCCGTGTCGTCCGAG--TACAAA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGTCTGTTCGAGCGTCATTGCACCCCTCAAGCATTGCTTGGT-CTTGGG-CTTCGCCCC?---------CGGCGAGCCCGAATTCCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAGA-TGATCCACATCCCGCTT-TCGAAGCCGAATTCGC-GCGCG-CCGGCCAGACAACCCCATACACC-TCCAA??ATTGACCTCGGATCA Anaptychia_ciliaris_498 ???????????????????????????GG----GGT------CTA?-CCGGCCCCACCTCT-TCACCCCTGTTTACCCA-CACCATGTTGCTTCCGCGTGATCTGCCGGCACTGTCGCTTTCGATGAGAGCAGTAATTCGGGCTGACCAGAC-GTGAGAGGCC?--------------------------------CTTCAAACCCTGTGT-TCAGCGTCGTCCGAG--TATAAA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCA-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCCTTGCACCCCTCAAGCAATGCTTGGT-ATTGGG-CTTCGCCCC?-----G---CGGCGGGCCCGAATTCTAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAGA-TTATCCACATCCCGCTT-TCGAAGCCTATCTCGC-GCGC?-CCGGCCAGATAACCCCATACAC--TCCG?????TTGCCTCGG???? Anaptychia_runcinata ATCATTACCGAGAG-----A------CGG----GGT------CTAA-CCGGCCCCAACTCT-TCACCCCTGTTTACCCA-AATCATGTTGCTTTGGCGGG-----TCAGCCGGTAGCC--CCGGGGGAGGC---GAGACCTCCTCGT-GCCC-GCCAAAGGCCC--------------------------------AAGCAAACCCTGTGA-TCAGTGTCGTCCGAG--CACAAAA-CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCAATCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACCGCTTGGT-ATTGG?-CCTCGCCCG?-----G---CGGCGGGCCTGAATTTTCGTGGCGGTCCGGT-GAGACTTGAAGCGT-AGCAAGATTCCATTCAACGCTGA----GCAAGCCTATCTCGCTGTGTG-CCGGCCAGACAACCCCCCGATTT-TCCAATGATTGACCTCGGATCA Buellia_alboatra_5345 ?????????GAGAGA-----------CGG----GGT------CTAA-CCGGCCCCACCTCT-TCACCCGTGTATACGT--ACCTTTGTTGCTTTGGCGGGCCC--TTG???TGGTCGACGCTGATCGTCGGTGGGAATCTCCAACCCCGCTCAGCGCGCGCCCGCC-----------------------AGAGGCCCTATAAATTCTGTTA-TCAGTGTCGTCCGAG--TATCAA-ATAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCA-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCAGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGCTATGGGCGTCACCTTCTC---------GGGTGTGCCTGAATTCCAGTGGCGGTTCAGTAGCGACTTTAAGCGT-AGTAAGA--TTTTCAAATCCCGCTTGCAAACGTCT--ATTGC--TGGG-CCTGTTAGACAACCCCATCTCCA------CGATTGACCTCGGATCA Buellia_alboatra_8043 ???????????????????????????GG----GGT------CT??-CCGGCCCCACCTCT-TCACCCGTGTATACGT--ATCTTTGTTGCTTTGGCGGGCC---TTGCT?CGGTCGACGCTGATCGCCGGATGGAATTTTCCACCCCGCTCAGCGCGCGCCCGCC-----------------------AGAG?CCCTATAAGTTCTGTTA-TCAGTGTAGTCCGAG--TATCAA-ATAATAAACTATAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCA-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCAGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGCTATGGGCGTCG?CTTCTC---------GGGCGTGCCTGAATTCTAGTGGCGGTCCAGTAGAGACTTCAAGCGT-AGTAAGA--TTTTTATATCCCGCTTGCACACGTCT--ATTGC--TGGG-CCTGTCAGACAACCCCATCTCCG??????????????????????? Buellia_disciformis ATCATTAGCGAGAGA-----------CGG----GGT------CTAA-CCGGCCCTA-CTCT-TCACCCGTGTATATCT--ACCTTTGTTGCTTCGGCGGGT--CTTCGGGACCGATCTC---------------GGGCCC------------------TGTCCGCC-----------------------GAAG??CACGAAACTCTGGTTA-ACAGTGACGTCCGAG--TAAAT-CATAA-CAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCA-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGG?CATGCCTGTTCGAGCGTCATTGCACCTCTCAAGCATTGCTTGGT-ACTGGGCCT-CGCCCC------A---CGGCGTCCCCGAAATAGAGTGGCGGCTCAGC-GAGACTTCGAGCGT-AGTAAGA--TTTCTATATCCCGCTT-TGGAAGCTTCTCGGTGGGCTCG--CAGCTAAATCTAAAGCGCAAGCTTTCCACGATTGACCTCGGATCA Dimaelena_oreina ATCATTACCGAGAGA-----------CGG----GGT------CGAA-CCGGCCCCA-CTCT-TCACCCCTGTATACCT--ACCTCTGTTGCTTTGGCGGGC--CGTCGGGCTCAATCGCCCGGCGTTGGTCGCGGGGCTCACGGCCCCGCCC-GCGAGCGCCCGCC-----------------------AAAGGCCCCGTAAACTCCGTTA-TCAGTGACGTCCGAG--TGGTTACACAAATAGCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCA-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATACCTGTTCGAGCGTCATTGCAACCCTCAAGCACCGCTTGGT-AGTGGGCCT-CGCCCCC-----G---TGGCGTGCCCGAAATCCCGTGGCGGTCCGGC-GAGACTTCGGGCGT-AGTAAGA--TTTCAGTGTCCCGCCT-CGGAAGCTCCTCGGTGGACCTGGCCAACAACAATGCAAGTGAACAACTTCCACGATTGACCTCGGATCA Heterodermia_speciosa ATCATTACCGAGAGA-----------CGG----GGT------CTAA-CCGGCCCCAACTCT-TCACCCGTGTCCTCAA--ATCTATGTTGCTTTGGCTGG---------------------CGG----------GCCATCGCCTGCATGCCA-GCCGGAAGTCA--------------------------------CTCAAAAATCTTTTA-TCGATAAAGTCCGAG--TAATCATTTAATAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGATAT-CGCCCCC-----G---GGACGGGTCCGAAAATCCGTGGCG-TCCGGC-GAGACTTCAAGCG--AACAAGA-----TTATATCCC-GCTGCAGAAGCAC--CTCGT--CGAG-CCGGCCAGTCAAATTATAATAAT-TCGTACGGTTGACCTCGGATCA Hyperphyscia_adglutinata ATCATTACCGAGAG-----A------CGG----GGT------CTAA-CCGGCCCCAACTCT-TCACCCGTGTATACCTT-ATTTCTGTTGCTTTGGCGGG------CCGTCGGGACCCCTT-GCGGAGGTT--CACACCCTCCTCGT-GCCC-GCCAGAAGCCC--------------------------------CATTAAACTCTGT-A-TCAGTGTCGTCCGAG--TACAAAC-CAATAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCCAGCATCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATCCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCACTCAAGCCTTGCTTGGT-ATTGGG-CGTCGCCTCC---------GGGCGAGCCCGGAACTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATATTTCTATCCCGCTT-TGGAAGCTC--CCCGCTGCGTG-CCGGCCAGACAACCCCAAATTTT-TTCAATGGTTGACCTCGGATCA Mobergia_calculiformis ATCATTATCGAGAGA----------CGGA----GGT------CTAA-CCGGCCTCCACTCT-TCACCCGTGTCTACTT--ACCTATGTTGCTTTGGCGGGC--CTCGGGGTT---TCGTCCCGGGAAAGCT---GCTCGCTTTCCAGCGCTC-GTCAAACGCCC--------------------------------CAACCAATTCTGTTA-TCAGTGTCGTCCGAG--TCATCACACAATAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCATAGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGGGCCCGAAATCCGTAGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAGA-TTGGTAACATCCC-GCTTTGCAAGCTT--CTCGTTGCGTG-TCAGCCTGACAAC----ATTCTT-TTCAATGGTTGACCTCGGATCA Phaeophyscia_ciliata_7892 ATCATTACCGAGAG----------CTTGG----GGT------CTAA-CCGGCCCCT-CTCT-TCACCCGTGTCTACAAAAACAAATGTTGCTTTGGCGGGC----CAGGGC--CCGTCCCTGGATGGGCTTAACCTTCCCACCCG-GTGCCC-GCCGAAG-TAC--------------------------------AACCAAACTCTGTTA-TCAGTGTCGTCCGAG--TATACACATAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCTCTCAAGCATTGCTTGGT-ATTGG-CCG-CGCCCCG-----G---TGGCGTGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGTGTG-CCGGCCAGACAACCCCATTATTT-ATCAATG?TT?ACCTCGGATCA Phaeophyscia_ciliata_7904 ATCATTACCGAGAG----------CTTGG----GGT------CTAA-CCGGCCCCT-CTCT-TCACCCGTGTCTACAAAAACAAATGTTGCTTTTG-GGCG----CAGGGCC-C?GTCCCTGGATGGGCTTAACCTTCCCACCCG-GTGCCC-GCCGAAGGTAC--------------------------------AACCAAACTCTGTTA-TCAGTGTCGTCCGAG--TATACACATAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCTCTCAAGCACTGCTTGGT-ATTGG-CCG-CGCCCCC-----G---TGGCGTGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGTGTG-CCGGCCAGACAACCCCATTATTT-ATCAATGGT?GA?????????? Phaeophyscia_constipata ATCATTACCGAGAG----------CCTGG----GGT------CTAA-CCGGCCCCA-CTCT-TCACCCGTGTCTATGAAAATACATGTTGCTTTGGCGGGC----TAGGGCAC-CGTCCCTGGATGGGCTTAACCTCCCCACCCG-GTGCCC-GCCGAAG-TCC--------------------------------AACCAAACTCTGTCA-TCAGTGTCGTCCGAG--TAAATATATAATAA--TAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCATTGCTTGGT-ATTGGGCTC-CGTCCCC-----G---TGACGAGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGCGTG-CCGGCCAGACAACCTCGCTATTTTATCAATGGTTGACCTCGGATCA Phaeophyscia_endococcina_408 ATCATTACCGAGAG----------CCTGG----GGT------CTAA-CCGGCCCCA-CTCT-TCACCCGTGTCTACGAAAATACATGTTGCTTTGGCGGGC----CGGGGCC---GTCCCTGGTTGGGCTTAACCTTCCCACCCG-GTGCCC-GCCGAGG-TAC--------------------------------CACCAAACTCTGTCA-TCAGTGTTGTCCGAG--TAAACATATAATAAC-TAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-ATTGGGCCTTCGTCCCC-----G---GGACGGGCCTGGAATACAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGTGTG-CCGGCCAGACAACCCCACTATTT-ATCAA?GG?????????????? Phaeophyscia_endococcina_4824 ???????????????????????????GG----GGT------CTTA?CCGGCCCCA-CTCT-TCACCCGTGTCTACGAAAATACATGTTGCTTTGGCGGGC----CAGGGCCG--TTCCCTGCTTGGGCTTAACCTCCCCACCCG-GTGCCC-GCCGAAG-TAC--------------------------------CACTAAACTCTGTCA-TAAGTGTCGTCCGAG--TAAACATATAATAAA-TAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---TGACGGGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTC--CCTGCTGTGTG-CCGGCCAGACAACCC?ACTATTT-ATCAATGGTTGACCTCGGATCA Phaeophyscia_endophoenica_4408 ATCATTA??GAGAG----------CCTGG----GGT------CTCA-CCGGCCCCA-CTCT-TCACCCGTGTCGACGAAAA??CATGTTGCTTTGGCGGGC----CAGGGCC?GTCCCCCTGGATGGGCTTAACCTCCCCACCCCCGTGCCC-GCCGAAG-ATT--------------------------------CACCAAACTCTGTCA-TCAGTGTCGTCCGAG--TAAACATATAATAAC-TAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---TGACGTGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGTGTG-CCGGCCAGACAACCCCATTATTT-ATCAA????????????????? Phaeophyscia_nigricans ATCATTACCGAGAGA---------CCTGG----GGT------CTAA-CCGACCCCA-CTCT-TCACCCGTGCCTACGAAAACACATGTTGCTTTGGCGGGC----CAGGGC--CTGTCCCTGGTTGAGCTAGTTCACCCC------GTGCCC-GCCAAAGGTTC--------------------------------AATCAAACTCTGTTA-TCAGTGTCGTCCGAG--TAAACATACAATAA-CTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-CTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-ATTGGGCTC-CGCCCC?-----G---TGGCGGGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTC--CCTGCTGCGTG-CCGGCCAGATAACCACATTACTT-TCCAATGATTGACCTCGG-TCA Phaeophyscia_orbicularis_325 ATCATTACCGAGAG----------CTCGG----GGT------CTAA-CCGGCCCCT-CTCT-TCACCCGTGTTTACAAAAACAAACGTTGCTTTGGCGGGC----CAGGGC--C?GTCCCTGGATGGGCTTAACCTTCCCACCCG-GTGCCC-GCCGAAG-TAC--------------------------------AACCAAACTCTGTTA-TCAGTGTCGTCCGAG--TATACACATAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGTCTGTTCGAGCGTCATTGCACCTCTCAAGCACTGCTTGGT-ATTGG-CCG-CGCCCC?-----G---TGGCGTGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AG?AAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGTGTG-CCGGCCAGACAACCCCATTATTT-ATCAATGGTTGACCTCGGATCA Phaeophyscia_orbicularis_7893 ATCATTACCGAGAG----------CTCGG----GGT------CTAA-CCGGCCCCT-CTCT-TCACCCGTGTTTACAAAAACAAACGTTGCTTTGGCGGGC----CAGGGC--CCGTCCCTGGATGGGCTTAACCTTCCCACCCG-GTGCCC-GCCGAAG-TAC--------------------------------AACCAAACTCTGTTA-TCAGTGTCGTCCGAG--TATACACATAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGTCTGTTCGAGCGTCATTGCACCTCTCAAGCACTGCTTGGT-ATTGGGCCG-CGCCCC?-----G---TGGCGTGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGTGTG-CCGGCCAGACAACCCCATTATTT-ATCAATGGTTGACCTCGGATCA Phaeophyscia_sciastra_1995_Löfgren ATCATTACCGAGAG----------CTTGG----GGT------CTAA-CCGGCCCCT-CTCT-TCACCCGTGTCCACGAAAACAAATGTTGCTTTGGCGGGC----CAGGGCT-CTGTCCCTGGATGGGCTTAACCTCCCCACCCG-GTGCCC-GCCGAAG-TAC--------------------------------AACCAAACTCTGTTA-TCAGTGTCGTCCGAG--TAAACACATAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAA-TTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-ATTGGGCTT-CGCCCC?-----G---TGGCGGGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AG-AAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGTGTG-CCGGCCAGACAACCCCACTCTTT-ATCAATGGTTGACCTCGGATCA Phaeophyscia_sciastra_1995_Myllys ATCATTACCGAGAG----------CTTGG----G?T------CTAA-CCGGCCCCT-CTCT-TCACCCGTGTCCACGAAAACAAATGTTGCTTTGGCGGGC----CAGGGC--CCGTCCCTGGATGGGCTTAATCTCCCCACCCG-GTGCCC-GCCGAAG-TAC--------------------------------AATCAAACTCTGTTA-TCAATGTCGTCCGAG--TACACACATAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGAAAAATTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTTCGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGTTATTGGGCTT-CGCCCC?-----G---TGGTGGGCCTGGAATTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTTCACGATCCCGCTT-TGGAAGGTT--CCTGCTGTGCG-CCGGCCAGACAACCCCACTATTT-ATCAATGGTTGACCTCGGATCA Phaerrhiza_nimbosa ATCATTACCGAGAG-----A------CGG----GGC------CGAA-CCGGCGAC--CTCT-TCACCCGTGTATACCGA-AATCATGTTGCTTTGGCGGG-----CCAGCCGGAAGCCCTCCGGGGAGGCC---GACCCCTCCTCGC-GCCC-GCCGAAGGCCC--------------------------------??ACAAACCCTGTTA-TCTGTGTCGTCCGAG--TACCAC--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTACTCCGAAGGGCATGCCTGTCCGAGCGTCATTGCACCCCTCAAGCTTTGCTTGGT-ATTGGG-TTTCGCCCC?-----G---CGGCGTGCCCGCATTCCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCACGCATTTATCACATCCCGCTTCTGGAAGGGTTTCTCGCTGCGTG-CCGGCCAGACAACCCCAGATCAC-CCCAA??GTTGACCTCGGATCA Physcia_adscendens_381 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCTCACCTCTATCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAGA--CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCCCGCCAAAG?CCC--------------------------------ATATAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAACAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTA-GCAAGA-TTT---ATATCCC-GCTTTGCATGTCT--CTCGCTGCGTT-CCGGCCAAACAACCCTTATATTT-TTC??????????????????? Physcia_adscendens_Myllys ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCTCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATATAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTA-GCAAGA-TTT---ATATCCC-GCTTTGCAAGTCT--CTCGCTGCGTG-CCGGCCAAACAACCCTTATATTT-TTCAA????????????????? Physcia_aipolia_var._aipolia_314 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCACCTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGG?TT---T-GTTCCGGGGA-------GTTTGCGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATACAAAACCTGTCA-TTAGTGTCGTCCGAG--TAAACATTTAATAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGT-ATTGGGTCT-CGTCCCC-----G---TGACGTGCCCGCAATTTGGTGGCGGTCCAGT-GAGACTTCAAGCG--ATCAAGA-TTTTC-ATATCCC-GCTTTGCAAGACT--CTCGCTGCGTG-CCGGCCAGACAACTCCTATTTTT-TC--AATGGTTGACTCGGATCA Physcia_aipolia_var._aipolia_7894a ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCACCTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGCT---T-GTTCCGGGGA-------GTTCACGCTCTTTCGCCC-GCCAAAGGCCA--------------------------------ATTCAAAACCTGTTAATCAGTGTCGTCCGAG--TAAATATTTAATAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGTACTGCTTGGT-ATTGGGTCT-CGTCCCT-----G---TGACGTGCCCGCAATTTGGTGGCGGTCCAGT-GAGACTTCAAGCGT-AGCAAGA-TTTCT-ATATCCC-GCTTTGGAAGCCT--CTCGCTGCGTG-CCGGCCAGACAACCCACAAAA????????????????????????? Physcia_aipolia_var._aipolia_7894c ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCACCTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGCT---T-GTTCCGGGGA-------GTTTACGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATACAAAACCTGTCA-TTAGTGTCGTCCGAG--TAAACATTTAATAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCATTGCTTGGT-ATTGGGTCT-CGTCCCC-----G---TGACGTGCCCGCAATTTGGTGGCGGTCCAGT-GAGACTTCAAGCG--ATCAAGA-TTTA--ATATCCC-GCTTTGAAAGACT--CTCGCTGCGTG-CCGGCCAGACAACTCATATC?????????????????????????? Physcia_aipolia_var._alnophila_380 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCC?ACCTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGCT---TTGTTCCGGGGA-------GCTCACGCTCTTTCGCCC-GCCAAAGGCCA--------------------------------ATTCAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAATATTTAATAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATTCGCAGAATTCCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGTACTGCTTGGT-ATTGGGTCT-CGTCCCT-----G---TGACGTGCCCGCAATTTGGTGGCGGTCCAGT-GAGACTTCAAGCGT-AGCAAGA-TTTCT-ATATCCC-GCTCTGGAAGCCT--CTCGCTGCGTG-CCGGCCAGACAACACACAAAATT-CA--ATGGTTGAC-TCGGATCA Physcia_aipolia_var._alnophila_399 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCACCTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGCT---T-GTTCCGGGGA-------GCTCACGCTCTTTCGCCC-GCCAAAGGC?A--------------------------------ATTCAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAATATTTAATAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGTACTGCTTGGT-ATTGGGTCT-CGTCCCT-----G---TGACGTGCCCGCAATTTGGTGGCGGTCCAGT-GAGACTTCAAGCGT-AGCAAGA-TTTCT-ATATCCC-GCTCTGGAAGCCT--CTCGCTGCGTG-CCGGCCAGACAACACACAAAATT-CA--ATGGTTGACCTCGGATCA Physcia_caesia_12019 ATCATTACCGAGAGA----------CGG-----GGC------CTAA-CCGGCCC?ACCTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGG?CT---T-GTTCCGGGGA-------GTTTGCGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATACAAAACCTGTCA-TTAGTGTCGTCCGAG--TAAACATTTAATAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATATTTGAACGCACATTGCGCCCTTTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCATCGCTTGGT-ATTGGGTCT-CGTCCCC-----G---TGACGTGCCCGCAATTTGGTGGCGGTCCAGT-GAGACTTCAAGCGT-AGCAAGA-TTT?C-ATATCCC-GCTTTGGAAGCCT--CTCGCTGCGTG-CCGGCCAGACAACTCCTATATTT-CA---TGGTTGACCTCGGATCA Physcia_caesia_346 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCACCTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGCT---T-GTTCCGGGGA-------GTTTACGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATACAAAACCTGTCA-TTAGTGTGGTCCGAG--TAAATATTTAATAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCATTGCTTGGT-ATTGGGTCT-CGTCCCC-----G---TGACGTGCCCGCAATTTGGTGGCGGTCCAGT-GAGACTTCAAGCGT-AGCAAGA-TTTTC-ATATCCC-GCTTTGGAAGACT--CTCGCTGCGTG-CCGGCCAGACAACTCCTATATTT-CA--ATGGTTGACCTCGGATCA Physcia_dimidiata_var._ornata_6663 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCC?--------------------------------ATACAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAATATTTAATAA-TTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGTCT-CGTCCCC-----G---CGACGTGCCCGCAATCTCGTGGCGGTCCAGT-GAGACTTGAAGCGT-AGCAAGA-TTTTT-ACATCCC-GCTTTGCAAGCCT--CTCGCTGCGTG-TCGGCCAAACAACCCTTATAATT-TTCAATGGTTGACCTCGGATCA Physcia_dubia_12016 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGG?C----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCC?--------------------------------ATACACAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACTCTCAAGCACTGCTTGGT-ATTGGGTCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTTAGCAAGA-TTTTT-ACATCCC-GCTT?GCAAGCTT--CTCGCTGCGTG-CCGGCCAAACAACCCTCATATTT-TTCAATGGTTGACCTCGGATCA Physcia_dubia_401 ATCATTACCGAGAGA----------CGG-----GGT-------TAA-CCGGCCCCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------GTACAAAACCTGTTA-TCAGTGTCGTCCGAG--CAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACGGCTTGGT-ATTGGGTCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTA-GCAAGA-TTTTT-ACATCCC-GCTTTGCAAGCCT--CTCGCTGCGTG-CCGGCCAAACAATCCATCTATTT-TTCA?????????????????? Physcia_leptalea_12031 ATCATTATCGAGAGA----------CGA-----GGT------CTAA-CCGGCCTCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATATAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCATTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTA-GCAAGA-TTT---ATATCCC-GCTTTGCAAGCCT--CTCGCTGCGTG-CCGGCCAAACAACCCTTATATAC-TCCAATGGTTGACCTCGGATCA Physcia_leptalea_12034 ATCATTATCGAGAGA----------CGA-----GGT------CTAA-CCGGCCTCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCC?--------------------------------ATATAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCATTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTACGAAGGA-TTT---ATATCCC-GCTTTGCAAGCCT--CTCGCTGCGTG-CCGGCCAAACAACCCTTATATAC-TC-AATGGTTGACCTCGGATCA Physcia_magnussonii ATCATTATCGAGAGA-----------CGG----GGT------CTAA-CCGGCCTCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTTGCCC-GCCAAAGGCCC--------------------------------ATACCAAACCTGTTA-TCCGTGTCGTCCGAG--TAACCATATAACAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---TGACGTGCCCGCAATTTCGTGGCGGTCCAGC-CAGACTTGAAGCGT-AGCAAGA-TTTTT-ACATCCC-GCTTTCCAAGTTT--CTCGCTGCGTG-CCGGCCAAACAACCCTTAATACT-GTCAATGGTTGACCTCGGATCA Physcia_stellaris_12009 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCAACTCT-TCATCCGTGTCTACGT--ACCAACGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACCCTCCTTCGCCC-GCCAAAGGCC?--------------------------------ATACAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGTCT-CGTCCCC-----G---CGACGTACCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGT-AGCAAGA-TTTTT-ACATCCC?GCTTTGCAAGCCT--CTCGCTGCGTG-CCGGCCAAACAACCCTTCTATTT-TTCAATGGTTGACCTCGGATCA Physcia_stellaris_453 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCCCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTTGCCC-GCCGAAGGCCC--------------------------------ATACAAAACCTGTTA-TCAGTGTCGTCCGAG--CAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGTCT-CGTCCCC-----G---CGACGTACCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGT-AGCAAGA-TTTTT-ACATCCC-GCTTTGCAAGCCT--CTCGCTGCGTG-CCGGCCAAACAACCCTTATATTT-TTCAATGGTTGACCTCGGATCA Physcia_tenella_var._marina_8050 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCTCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTTTTCCGGGGA-------GTTGACGCTCCTTCGCCC-GCCAAAGACCC--------------------------------ATATAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTA-GCAAGA-TTT---ATATCCC-GCTTTGCAAGCCT--CTCGCTGCGTG-CCGGCCAAACAACCATTATATTT-TTCAATGGTTGACCTCGGATCA Physcia_tenella_var._marina_8057 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCTCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATATAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTA-GCAAGA-TTT---ATATCCC-GCTTTGCAAGCCT--CTCGCTGCGTG-CCGGCCAAACAACCCTTCTATTT-TTCAATGGTTGACCTCGGATCA Physcia_tenella_var._tenella_311 ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCTCAACTCT-TCATCCGTGTCTACAT--ACCAATGTTGCTTTGGCGAG---CCTCGGGC?---TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATATAAAACCTGTTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TTAAAACTTTCAACAATGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTA-GCAAGA-TTT---ATATCCC-GCTTTGCAAGCCT--CTCGCTGCGTG-CCGGCCAAACAACCCTTCTATTT-TTCAATGGTTGACCTCGGATCA Physcia_tenella_var._tenella_Myllys ATCATTACCGAGAGA----------CGG-----GGT------CTAA-CCGGCCTCAACTCT-TCATCCGTGTCTACAT--ACCAGTGTTGCTTTGGCGAG---CCTCGGGC----TTGTTCCGGGGA-------GTTCACGCTCCTTCGCCC-GCCAAAGGCCC--------------------------------ATATAAAACCTGCTA-TCAGTGTCGTCCGAG--TAAACATATAATAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCACTGCTTGGT-ATTGGGCCT-CGTCCCC-----G---CGACGTGCCCGCAATTTCGTGGCGGTCCAGT-GAGACTTGAAGCGTA-GCAAGA-TTT---ATATCCCCGCTTTGCAAGCTT--CTCGCTGCGTG-CCGGCCAAACAACCTTTCTATTT-TTCAATGGTTGACCTCGGATCA Physconia_detersa_306 ATCATTACCGAGAG-----A------CGA----GAC------?TAA-CCGGTCCCAACTCT-TCACCCCTGTCTACAT--AAATATGTTGCTTTGGCGGG-----CCGAACCGGGCCTGTCCGGGGAAGGC--TGACCCCTTCTCGT-GCCC-GCCGAAGGCCC--------------------------------CAATAAACTCTGTGA-TTAGTGTCGTCCGAG--TAAAAA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCATTGCTTGGT-AATTGG-CT-CCCCCC?-----G---CGGCGGGCCCGGAACTTAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AACAAG--ATTATCACATCCCGCTT-AGCAAGCCT-TCTCGCCGCGTG-CCGGCCAGACAACCCAATAAAAT-CTCAA????????????????? Physconia_distorta_12036 ATCATTACCGAGAG-----A------CGA----GAC------CTAA-CCGGTCTCAACTCT-TCACCCCTGTCTACATT-AAATATGTTGCTTTGGCGGG-----CCAACCGGGCTCTGCTCGGGGAAGGC--TGACCCCTTCTCGT-GCCC-GCCGAACGCCC--------------------------------?AATAAACTCTGTGA-TTAGTGTCGTCCGAG--TAAAAA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCATTGCTTGGT-ATTGGG-CG-CGCCCC?-----G---CGGCGGGCCCGGAACTTAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTATCACATCCCGCTT-AGCAAGCCT-TCTCGCCGCGTG-CCGGCCAGACAACCCAATAAACT-CTCAA????????????????? Physconia_distorta_313 ATCATTACCGAGAG-----A------CGG----GA?------?TAA-CCGGTCCCAACTCT-T-ACCCCTGTCTACCTC-AAATATGTTGCTTTGGCGTG-----TCAACC-GGGCCTGTCCGGGGAAGGC--TAGCCCCTTCTCGT-GCCC-GC-GAAGGCCC--------------------------------CAACAAACCCTGTGA-TTAGTGTCGTCCGAG--TAAAAA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-AATTGG-T--CGCCCC?-----G---CGGTGGGCCCGGAACTCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTATCACATCCCGCTT-AGCAAGCCT-TCCCGCTGCGTG-CCGGCCAGACAACCCAATAGAAT-CT?AA????????????????? Physconia_enteroxantha ATCATTACCGAGAG-----A------CGG----GAC------CTAA-CCGGTTCCAACTCT-TCACCCCTGTCTACCC--TAATATGTTGCTTTGGCGGG-----CCAACC-GGGCTTCCCCGGGGAAGGC--TGACCCCTTCTCGT-GCCC-GCCGAAGGCCC--------------------------------CAACAAACCCTGTGA-TCAGTGTCGTCCGAG--TAAAAA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCATTGCTTGGT-ATTGG?-CCTCGCCCC?-----G---CGGCGGGCCTGGATTCTAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAGG-ATTACTACATCCCGCTT-AGCAAGCCT-TCTCGCTGCGTG-CCGGCCAGACAACCCTACACAAT-TTCAATGATTGACCTCGGATCA Physconia_grisea ATCATTACCGAGGG-----A------CGG----?GT------CTAA-CCGGCCCCAACTCT-TCACCCCTGTTTACCAA-AATCATGTTGCTTTGGCGGG-----TCAGCC-GGGCCTCTC-GGGGAAGGT--AAACCCCTTCTCGC-GCCC-GCCAAAAGCCC--------------------------------AAGCAAACCCTGTGA-TCAGTGTCGTCCGAG--TATACA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-ATTGGGTCCTCGCCTC?-----G---CGGCGGGCCCGGATTCTAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTATCACATCCCGCTT-AGCAAGCCTATCTCGATGCGTG-CCGGCCAGACAACCCCATCCATC-TCCAA????????????????? Physconia_muscigena ATCATTACCGAGAG-----A------CGG----GAT------CTAA-CCGGTCCCAACTCT-TCACCCCTGTCTACCC--AAATATGTTGCTTTGGCGGG-----CCAACC-GGGCCTCCTCGGGGAAGGC--CAACCCCTTCTCGT-GCCC-GCCAAAGGCCTT-------------------------------CAATAAACCCTGTGA-TCAGTGTCGTCCGAG--TAAAAA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GCGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGG?CATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-ATTGGG-CTTCGCCCT?-----G---CGGCGGGCCCGGATTCTAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTATCACATCCCGCTT-AGCAAGCCT-TTTCGCTGCGTG-CCGGCCAGACAACCCTATACCAT-C-CAATGATTGACCTCGGATCA Physconia_perisidiosa ???????????????????????????GG----GGC------CTAA-CCGGCCCCAGCTCT-TCACCCGTGTCTACTCA-ATATATGTTGCTTTGGCGGG-----CCAGCC-GGGGCTCTCCGGGGGAGGT--TTATCCCTTCTCGC-GCTC-GCCAAAGGCCC--------------------------------TAGCAAACCCTGTGA-TCAGTGTCGTCCGAG--TAAAAA--CAATCG-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCACTGCTTGGT-ATTTGG-CCTCGCCCC?-----G---CGGCGGGCCCGGATCCCAGTGGCGGTCCAGC-GAGACTTCAAGCGT-AGCAAG--ATTACCACATCCCGCTT-AGCAAGCCTATCCCGTTGCGTG-CCGGCCAGACAACCCCATACATC-TTCA?????????????????? Rinodina_turfacea ATCATTATCGAGAG-----A------CGA----GGT------CTAA-CCGGCCTCAACTCT-TCACCCGTGTATACCAAAAAACATGTTGCTTTGGCGGG-----CCAGCCGAAGAATCTTCGGGGGAGGC--TCACCCCTCCTCGT-GCCC-GCCAATGGCCC--------------------------------AATCAAACCCTGTTA-TCCGTGCCGTCCGAG--TACAAACATAATAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCGTCGATGAAGAACGCAGCGAAATGCGAAAA-GTAATGTGAATT-GCAGAATTCC-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCTTGTTCGAGCGTCATTACATCTCTCAAGCTTTGCTTGGT-ATTGGG-CCTCGCCCCC-----G---TGGCGTGCCCGGATCTCAGTGGCGGTCCAAC-GAGACTTCAAGCGT-AGCAAG---ATTTTACATCCCGCTT-TGGAAGCCTTTCTCGTTGAGTG-CTAGCCAGACAACCCCATTTTAC-TCAACTGATTGACCTCGGATCA Xanthoria_parietina ATCATTACCGAGAGTGACGGACCCGCCGC--GCCGT-CCCGGGG??CCCGCCCCGACCTCTTCAACCC-TGTGAATATTTGCCCTTGTTGCTTCGGCGAG---CGTCGAGC----CTTTCGCGCCTCGGCCCCGGCTCCGGCCGGTGAGCTCTCGCCGAGG?CC?-------------------------------CTCTCCATTCGGCTCTACAGTGACGTCCGAGGATTTGCAATCAAT--ATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCA-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCAACCCTCAAGCTCTGCTTGGT-ATTGGGCGTTCGCTTCC-----AAGGAGGCGCGCCCGCAAATCAGTGGCGGTCCAGG-GAGACTTCAAGCGC-AGTAGAA-------ACATTCCGCTA-TCGAGGTGT-----CGCCTGCGCCTGGCCAGAAAACCCCCAAATTCCAATGATTGAC???????????? Xanthoria_sorediata ATCATTACCGAGAGAGGGATATACGCTCCCGGCCGTATCCCGGGGGGCTGCCCCCCCTTCTTCAACCCCTGTGCGTATTAACCGCTGTTGCTTCGGCGAG---CGTCGGGG----CGTCCG-GCGCCGCTCCCGGCCTCGGTCGGTGAGCTCTCGCGGAGG?CC?-------------------------------ATCTCTATTCTG-TTTGCAGTGACGTCCGAGAATACCAACACAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA-GTAATGTGAATT-GCAGAATTCA-GTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATACCTGTTCGAGCGTCATTGCAACCCTCAAGCTTTGCTTGGT-ATTGGGCGCTCGCTTCCCGGACGGGGGAGGGTGCCCGCAAACTAGTGGCGGTCCAGG-GAGACTTCAAGCGC-AGTAGAA-------TCATTCCGCTT-TCGAGGTTG-----TCCGTGCGCCCGGCCGTGAAACCCCCAACTTCAA????????????????????? ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS) = N: 1-599; CODONPOSSET CodonPositions (CHARACTERS = ITS) = N: 1-599; END; [ The following blocks are output data for analysis step 966 ] BEGIN TREES; TITLE Tb5742; LINK TAXA = TaxaForAnalysisStep966; TREE Fig._2 = [&R] (Xanthoria_parietina,Xanthoria_sorediata,(((Buellia_alboatra_8043,Buellia_alboatra_5345),(Amandinea_punctata,(Buellia_disciformis,Dimaelena_oreina)))Buellia_group,((Heterodermia_speciosa,(Mobergia_calculiformis,(Physcia_magnussonii,(Physcia_dimidiata_var._ornata_6663,Physcia_dubia_12016,Physcia_dubia_401,Physcia_stellaris_453,Physcia_stellaris_12009,((Physcia_aipolia_var._aipolia_7894a,(Physcia_aipolia_var._alnophila_380,Physcia_aipolia_var._alnophila_399)),(Physcia_caesia_12019,Physcia_caesia_346,(Physcia_aipolia_var._aipolia_314,Physcia_aipolia_var._aipolia_7894c))),(Physcia_tenella_var._tenella_311,Physcia_tenella_var._tenella_Myllys,Physcia_tenella_var._marina_8057,Physcia_tenella_var._marina_8050,(Physcia_adscendens_381,Physcia_adscendens_Myllys),(Physcia_leptalea_12031,Physcia_leptalea_12034))))))Physcia_group,((Phaeophyscia_nigricans,((Phaeophyscia_constipata,Phaeophyscia_endophoenica_4408,(Phaeophyscia_endococcina_408,Phaeophyscia_endococcina_4824)),(Phaeophyscia_sciastra_1995_Löfgren,Phaeophyscia_sciastra_1995_Myllys,(Phaeophyscia_ciliata_7892,Phaeophyscia_ciliata_7904,(Phaeophyscia_orbicularis_325,Phaeophyscia_orbicularis_7893)))))Phaeophyscia,(Hyperphyscia_adglutinata,(Rinodina_turfacea,(Phaerrhiza_nimbosa,((Anaptychia_ciliaris_301,Anaptychia_ciliaris_498),(Anaptychia_runcinata,(Physconia_grisea,(Physconia_perisidiosa,(Physconia_muscigena,Physconia_enteroxantha,(Physconia_distorta_313,(Physconia_distorta_12036,Physconia_detersa_306)))))))))Physconia_group))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3602] END;