#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 13, 2026; 18:30 GMT TreeBASE (cc) 1994-2008 Study reference: Moon C., Scott B., Schardl C.L., & Christensen M. 2000. The evolutionary origins of Epichloë endophytes from annual ryegrasses. Mycologia, 92(6): 1103-1118. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S648] [ The following blocks are input data for analysis step 968 ] BEGIN TAXA; TITLE TaxaForAnalysisStep968; DIMENSIONS NTAX=40; TAXLABELS Epichloe_amarillans_200743 Epichloe_amarillans_200744 Epichloe_baconii_200745 Epichloe_baconii_76552 Epichloe_baconii_90167 Epichloe_brachyelytri_200752 Epichloe_brachyelytri_201561 Epichloe_bromicola_200749 Epichloe_bromicola_200750 Epichloe_bromicola_201559 Epichloe_clarkii_200742 Epichloe_elymi_200850 Epichloe_elymi_201551 Epichloe_festucae_90661 Epichloe_glyceriae_200747 Epichloe_glyceriae_200755 Epichloe_sylvatica_200748 Epichloe_sylvatica_200751 Epichloe_typhina_200736 Epichloe_typhina_200738 Epichloe_typhina_200739 Epichloe_typhina_200740 Epichloe_typhina_200849 Epichloe_typhina_200851 Epichloe_typhina_201666 Epichloe_typhina_201667 Epichloe_typhina_201669 Epichloe_typhina_E348 Neotyphodium_coenophialum_90664_tub2.2 Neotyphodium_coenophialum_90664_tub2.4 Neotyphodium_occultans_Lm1a Neotyphodium_occultans_Lro1a Neotyphodium_occultans_Lro1b Neotyphodium_occultans_Lrr1a Neotyphodium_occultans_Lrr1b Neotyphodium_occultans_Lrr2a Neotyphodium_occultans_Lrr2b Neotyphodium_sp_FaTG2_e41_tub2.4 Neotyphodium_sp._FaTG3_Tf18_tub2.5 Neotyphodium_typhinum_var._canariense_Lc4 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3640] TITLE Not_printed; LINK TAXA = TaxaForAnalysisStep968; DIMENSIONS NCHAR=600; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= .; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Epichloe_amarillans_200743 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AAAATGAACGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAACA..GCATGAAAAA.CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAGAGAAAAAGTGTCAT..CATGCTCATCCATGTGACAGGCTTCT........ Epichloe_amarillans_200744 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AAAATTAACGAATGCGGTATTCGAGAACTG.TAGCTGACCGTTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAACA..ACATGAAAAA.CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAGAGAAAAAGTGTCAT..CATGCTCATCCATGTGACAGGCTTCT........ Epichloe_baconii_200745 ...............................AAGTTCAAGCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCAAACGAC.GGGCACAAACA..GCATGAAAAA.CTCACATTCAT???GGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGAGACGGGAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCT........ Epichloe_baconii_76552 ...............................AAGTTCAAACTCCCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCACCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACGAC.AGGCACAAACA..GCATGAAAAA.CTCACATTCTTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAAAGAACGAAAGAAAAAGTGCTAT..CATGCTCATCCATGTGACAGGCTTCT........ Epichloe_baconii_90167 ...............................AAGTTCAAACTCCCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCTCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACGAC.AGGCACAAACA..GCATGAAAAA.CTCACATTCTTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAAAGAACGAAAGAAAAAGTGCTAT..CATGCTCATCCATGTGACAGGCTTCT........ Epichloe_brachyelytri_200752 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGAACCCC.....GCCGAGTGCGGCCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AAAATTCATGAATGCGGTATTCGAGAACTG.TAGCTGACC...TTTTTC.......TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGGACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGAGACGGAAAGAGAAGGAAAGAAAAAGTGTCAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_brachyelytri_201561 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGAACCCC.....GCCGAGTGCGGCCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AAAATTCATGAATGCGGTATTCGAGAACTG.TAGCTGACC...TTTTTC.......TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGGACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACACAC...CG.CCCTGGAGATGAGACGGAAAGAGAAGGAAAGAAAAAGTGTCAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_bromicola_200749 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAATGAAC.AGTCGTGATGAGAGGCGGACCGAGAC..AAAAAAAATAATGATTGCGGTATTCGAGAACTG.TAGCTGACC...TTTTCC.......TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATAACACATGGAAAA.CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTGCATAC...CG.CCCTGGAGATGAGACGGAAAGAGAACG..ATAAAAAGTGTTA..ACATGCTAATCTATGTGACAGGCTTCT........ Epichloe_bromicola_200750 .............................GTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAATGAAC.AGTCGTGATGAGAGGCGGACCGAGACAAAAAAAAAATGATGATTGCGGTATTCGAGAACTG.TAGCTGACC...TTTTCC.......TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTTGAACGAC.AGGCACAAACAACACATGAAAAA.CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTTGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGAGACGGAAAGAGAACG..ATAAAAAGTGTTA..ACATGCTAATCTATGTGACAGGCTTCTGGCAACAA Epichloe_bromicola_201559 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAATGAAC.AGTCGTGATGAGAGGCGGACCGAGACAAAAAAAAAATGATGATTGCGGTATTCGAGAACTG.TAGCTGACC...TTTTCC.......TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAACAACACATGGAAAA.CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGCAGATGAGACGGAAAGAGAACG..ATAAAAAGTGTTA..ACATGCTCATCTATGTGACAGGCTTCT........ Epichloe_clarkii_200742 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCTCCCTCGACGCGTTCCAGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG.TAGCTGACC..TTTTTTC.......TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTACAAAAGTCTCCATTGAGCTACATAC...TG.CCCTGGAGATGGGGCGGGAGAAGATGGAAAGGAAAAGTGTTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_elymi_200850 ...............................AAGTTTAACCGCTCTGTTTGTCTTGGGGACACCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAATGGACAAGTCGTGATGAGAGGCGGACCGAGAC...AAAAAATTAATGATTGCGGTATTCGAGAACTGTTAGCTGACC...TTTTTC.......TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTAGAACGAC.GGGCACAAATA..ACATGAAAAA.CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTCATCATATGCTAATCTATGTGACAGGCTTCT........ Epichloe_elymi_201551 ...............................AAGTTTAACCGCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACGTTGCACGCCCAATGGAC.AGTCGTGATGAGAGGCGGACCGAGAC...AAAAAATTAATGATTGCGGTATTCGAGAACTGTTAGCTGACC...TTTTTC.......TTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTAGAACGAC.GGGCACAAATA..ACATGAAAAA.CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTCATCATATGCTAATCTATGTGACAGGCTTCT........ Epichloe_festucae_90661 AACAAGTAACCGACAAAATGCGTGAGATTGTAAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGAAG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAACGAC.AGGCACAAACA..GCATGAAAAA.CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGGGACGGAAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCT........ Epichloe_glyceriae_200747 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCC....CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAATGGAC.AGTCGT?ATGAGAGGCGGATCGAGAC.....AAAATTAAAGATTGCGGTATTCGAGAACTG.TAGCTGACCTTTTTCTTCCTCTCTTCTCCCCTCTAGG??CATC???AAACCGGTCAGTGCGTAAGTGACAAATTCGCCGA?CTCGAGCGAC.AGGCACCAATA..ACATGAAAAA.CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTATATAC....CGCCCTGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTCAT..AATGCTAATCTATGTGACAGGCTTCT........ Epichloe_glyceriae_200755 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCC....CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAATGGAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAAAGATTGCGGTATTCGAGAACTG.TAGCTGACCTTTTTCTTCCCCTCTTCTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAGCGAC.AGGCACCAATA..ACATGAAAAA.CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTATATAC....CGCCCTGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTCAT..AATGCTAATCTATGTGACAGGCTTCT........ Epichloe_sylvatica_200748 ...............................GAGTTCATTCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGAC.AGTAGTGATGAGAGGCGGACCGAGAC.....AACATTAATGAATGCGGTATTCGAAAACCG.TAGCTGACC...TTTTTC.......TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCGGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGTTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_sylvatica_200751 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCATGATGAGAGGCGGACCGAGAC.....AACATTAATGAATGCGGTATTCGAAAACCG.TAGCTGACC...TTTTTC.......TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGTTAT..CATGC??ATCTATGTGACAGGCTTCT........ Epichloe_typhina_200736 AACAAGTAACCGAGAAAATGCGTGAGATTGTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCCGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG.TAGCTGACC..TTTTTTC.......TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTACAAAAGTCTCCATTGAGCTACATAC...TG.CCCTGGAGATGGGGCGGGAGAAGATGGAAAGGAAAAGTGTTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_typhina_200738 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC.....AACATTGATGAACGCGGTATTCGAAAACCG.TAGCTGA.C..TTTTTTA.......TTTCCCTCTAGGTTCATCTTCAAACCGGCCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGACAAGGCACAGATA..ACATGAAAAA.CTCACATTGACTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGGGACGGGAAAAGAAGCGAAGAAAAAGTATTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_typhina_200739 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCATGATGAGAGGCGGACCGAGAC.....AACATTAATGAATGCGGTATTCGAAAACCG.TAGCTGACC...TTTTTC.......TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGGGACGGAAAAAGAGGGAAAGAAAAAGTGTTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_typhina_200740 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG.TAGCTGACC..TTTTTTC.......TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCTATTGAGCTACATAC...CGCCCC.GGAGATGGGACGGGAAAAGAAGCAAATAAAACGTGTTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_typhina_200849 .............................GTGAGTTCAACCTCTCTGTTTGTCTTGGGGACCC....CCTCGACGCGTTCCCGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC.....AACATTGATGAATGCTGTATTCGAAAACCG.TAGCTGACC..TTTTTTC.......TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGGGACGGGAAAAGAAGCGAAGAAAAAGTATTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_typhina_200851 ...............................GAGTCCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCCGTGTTGAG..CCCCTGATTTCGTACCCCGCCGAGCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAGAGGCGGGCCGAGAC.....AACATTGATGAATGCTGTATTCGAAAACCG.TAGCTGACCTTTTTTTTC.......TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATTGGACAGGAAAAGATGGAAAGAAAAAGTGCCAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_typhina_201666 .............................GTGAGTCCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCCGTGTTGAG..CCCCTGATTTCGTACCCCGCCGAGCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAGAGGCGGGCCGAGAC.....AACATTGATGAATGCTGTATTCGAAAACCG.TAGCTGACCTTTTTTTTC.......TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCCCCATTGAGCTACATAC...CG.CCCTGGAGATTGGACAGGAAAAGATGGAAAGAAAAAGTGCCAT..CATGCTAATCTATGTGACAGGCTTCTGGCAACAA Epichloe_typhina_201667 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTCGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG.TAGCTGACC...TTTTTC.......TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC...................AAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGTTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_typhina_201669 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGATGCGTTCCGGTGTCGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG.TAGCTGACC...TTTTTC.......TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC...................AAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGAGACGGAAAGAGAAGGAAAGAAAAAGTGTTAT..CATGCTAATCTATGTGACAGGCTTCT........ Epichloe_typhina_E348 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCCGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGGTGAGAGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG.TAGCTGACC..TTTTTTC.......TTTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGCTACATAC...CGCCCCTGGAGACGGGACGGGAAAAGAAGCGAAGAAAAAGTATTAT..CATGCTAATCTATGTGACAGGCTTCT........ Neotyphodium_coenophialum_90664_tub2.2 ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGAAG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATTCGCCGACCTCGAACGAC.AGGCACAAACA..GCATGAAAAA.CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATACATACCGCCCCGGAGATGGGACGGAAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCT........ Neotyphodium_coenophialum_90664_tub2.4 ...............................AAGTTCAAACTCTCTGTCTGTCTTGGAACCTCTCT.CCTCGACGCGTTCCGGTGTTGAGCCCCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACGAC.AGGCACAAACA..GCATGAAAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCT........ Neotyphodium_occultans_Lm1a ...............................AAGTTCAAACTCTCTGTCTGTCTTGGAACCCCTCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....CCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACAAC.AGGCACAAACA..GCATGAAAAAACTCACATTCATTTGAGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCT........ Neotyphodium_occultans_Lro1a ...............................AAGTTCAAACTCTCTGTCTGTCTTGGAACCCCTCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....CCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACAAC.AGGCACAAACA..GCATGAAAAAACTCACATTCATTTGAGCAGGGTAACCTAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCT........ Neotyphodium_occultans_Lro1b ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAATGAAC.AGTCGTGATGAGAGGCGGACCGAGAC..AAAAAAAATAATGATTGCTGTATTCGAGAACTG.TAGCTGACC...TTTTCC.......TTTTCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAACAACACATGAAAAA.CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGAGACGGAAAGAGATCG..ATAAAAAGTGTGA..ACATGCTAATCTATGTGACAGGCTTCT........ Neotyphodium_occultans_Lrr1a ...............................AAGTTCAAACTCTCTGTCTGTCTTGGAACCCCTCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....CCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACAAC.AGGCACAAACA..GCATGAAAAATCTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAAACGGAAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCT........ Neotyphodium_occultans_Lrr1b ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAACCCGGCCACGACG.TGCACGCCCAATGAAC.AGTCGTGATGAGAGGCGGACCGAGAC..AAAAAAAATAATGATTGCTGTATTCGAGAACTG.TAGCTGACC...TTTTCC.......TTTTCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAACAACACATGAAAAA.CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGAGACGGAAAGAGATCG..ATAAAAAGTGTGA..ACATGCTAATCTATGTGACAGGCTTCT........ Neotyphodium_occultans_Lrr2a ...............................AAGTTCAAA..CTCTGTCTGTCTTGGAACCCCTCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....CCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACAAC.AGGCACAAACA..GCATGAAAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTACATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCT........ Neotyphodium_occultans_Lrr2b ...............................AAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAACCCGGCCACGACG.TGCACGCCCAATGAAC.AGTCGTGATGAGAGGCGGACCGAGAC..AAAAAAAATAATGATTGCTGTATTCGAGAACTG.TAGCTGACC...TTTTCC.......TTTTCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAACAACACATGAAAAA.CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCGCGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCATTGAGCTACATAC...CG.CCCTGGAGATGAGACGGAAAGAGATCG..ATAAAAAGTGTGA..ACATGCTAATCTATGTGACAGGCTTCT........ Neotyphodium_sp_FaTG2_e41_tub2.4 .................ATGCGTGAGATTGTAAGTTCAAACTCTCTGTCTGTCTTGGAACCTCCCT.CCTCGACGCGTTCCGGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGAAC.AGTCGTGATGAGAGGCGGATCGAGAC.....AAAATTAATGAATGCGGTATTCGAGAACTG.TAGCTGACCTGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAAT.CGCCGACCTCGAACGAC.AGGCACAAACA..GCATGAAAAAACTCACATTCATCTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT...AAAGTCTCCGTTGAGCTATATACATACCGCCCCGGAGATGAGACGGAAAGAGAACGAAAGAAAAAGTGTTAT..CATGCTCATCCATGTGACAGGCTTCTGGCAACAA Neotyphodium_sp._FaTG3_Tf18_tub2.5 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCCGTGTTGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC.....AACATTGATGAATGCGGTATTCGAAAACCG.TAGCTGACC..TTGTTTC.......TTTGCCTCCAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCCGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAACCTAAAAAAGTCCCCATTGAGCTACATAC...CG.CCCTGGAGATGGGGCAGGAAAAGATGGAAAGAAAAAGTGTTAT..CATGCTAATCTATGTGACAGGCTTCTGGCAACAA Neotyphodium_typhinum_var._canariense_Lc4 ...............................GAGTTCAACCTCTCTGTTTGTCTTGGGGACCCCCT.CCTCGACGCGTTCCGGTGTCGAG..CCCCTGATTTCGTACCCC.....GCCGAGCCCGGCCACGACG.TGCACGCCCAACGGAC.AGTCGTGATGAGAGGCGGACCGAGAC.....AACATCATTGAATGCGGTATTCGAGAACTG.TAGCTGACC...TTTTTC.......TTTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATCTGCCGACCTCGAACGAC.AGGCACAAATA..ACATGAAAAA.CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC...................AAGTCTCCATTGAGCTACATAC...CG.CCCTGAAGATGGGACGGAAAAAGAAGGAAAGAAAAAGTGTTAT..CATGCTAATCTATGTGACAGGCTTCT........ ; END; [ The following blocks are output data for analysis step 968 ] BEGIN TREES; TITLE Tb5744; LINK TAXA = TaxaForAnalysisStep968; TREE Fig._6C = [&R] (Epichloe_amarillans_200743,(Epichloe_amarillans_200744,((Epichloe_baconii_200745,(((Epichloe_baconii_76552,Epichloe_baconii_90167),((((Neotyphodium_occultans_Lm1a,Neotyphodium_occultans_Lro1a),Neotyphodium_occultans_Lrr1a,Neotyphodium_occultans_Lrr2a),Neotyphodium_coenophialum_90664_tub2.4),Neotyphodium_sp_FaTG2_e41_tub2.4)),(Epichloe_festucae_90661,Neotyphodium_coenophialum_90664_tub2.2))),(((Epichloe_brachyelytri_200752,Epichloe_brachyelytri_201561),(((((((Epichloe_clarkii_200742,Epichloe_typhina_200736),Neotyphodium_sp._FaTG3_Tf18_tub2.5),(Epichloe_typhina_200851,Epichloe_typhina_201666)),((Epichloe_typhina_200738,(Epichloe_typhina_200849,Epichloe_typhina_E348)),Epichloe_typhina_200740)),Epichloe_sylvatica_200748),(Epichloe_sylvatica_200751,Epichloe_typhina_200739)),(Epichloe_typhina_201669,(Neotyphodium_typhinum_var._canariense_Lc4,Epichloe_typhina_201667)))),(((Epichloe_bromicola_200749,((Epichloe_bromicola_200750,Epichloe_bromicola_201559),(Neotyphodium_occultans_Lro1b,(Neotyphodium_occultans_Lrr1b,Neotyphodium_occultans_Lrr2b)))),(Epichloe_elymi_200850,Epichloe_elymi_201551)),(Epichloe_glyceriae_200747,Epichloe_glyceriae_200755)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3607] END; BEGIN TREES; TITLE Tb5744; LINK TAXA = TaxaForAnalysisStep968; TREE Fig._5 = [&R] (((Epichloe_amarillans_200743,Epichloe_amarillans_200744),(Epichloe_baconii_200745,((Epichloe_baconii_76552,Epichloe_baconii_90167),(((Neotyphodium_occultans_Lm1a,Neotyphodium_occultans_Lro1a),Neotyphodium_occultans_Lrr1a,Neotyphodium_occultans_Lrr2a),Neotyphodium_coenophialum_90664_tub2.4,Neotyphodium_sp_FaTG2_e41_tub2.4)),(Epichloe_festucae_90661,Neotyphodium_coenophialum_90664_tub2.2))),((Epichloe_brachyelytri_200752,Epichloe_brachyelytri_201561),(((((Epichloe_clarkii_200742,Epichloe_typhina_200736),(Epichloe_typhina_200851,Epichloe_typhina_201666),Neotyphodium_sp._FaTG3_Tf18_tub2.5),((Epichloe_typhina_200738,(Epichloe_typhina_200849,Epichloe_typhina_E348)),Epichloe_typhina_200740)),Epichloe_sylvatica_200748,(Epichloe_sylvatica_200751,Epichloe_typhina_200739)),(Epichloe_typhina_201669,(Neotyphodium_typhinum_var._canariense_Lc4,Epichloe_typhina_201667)))),((Epichloe_bromicola_200749,Epichloe_bromicola_200750,Epichloe_bromicola_201559,(Neotyphodium_occultans_Lro1b,(Neotyphodium_occultans_Lrr1b,Neotyphodium_occultans_Lrr2b))),(Epichloe_elymi_200850,Epichloe_elymi_201551)),(Epichloe_glyceriae_200747,Epichloe_glyceriae_200755)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3606] END; BEGIN TREES; TITLE Tb5744; LINK TAXA = TaxaForAnalysisStep968; TREE Fig._6A = [&R] (Epichloe_amarillans_200743,(Epichloe_amarillans_200744,((Epichloe_baconii_200745,(((Epichloe_baconii_76552,Epichloe_baconii_90167),((((Neotyphodium_occultans_Lm1a,Neotyphodium_occultans_Lro1a),Neotyphodium_occultans_Lrr1a,Neotyphodium_occultans_Lrr2a),Neotyphodium_coenophialum_90664_tub2.4),Neotyphodium_sp_FaTG2_e41_tub2.4)),(Epichloe_festucae_90661,Neotyphodium_coenophialum_90664_tub2.2))),(((Epichloe_brachyelytri_200752,Epichloe_brachyelytri_201561),(((((((Epichloe_clarkii_200742,Epichloe_typhina_200736),Neotyphodium_sp._FaTG3_Tf18_tub2.5),(Epichloe_typhina_200851,Epichloe_typhina_201666)),((Epichloe_typhina_200738,(Epichloe_typhina_200849,Epichloe_typhina_E348)),Epichloe_typhina_200740)),Epichloe_sylvatica_200748),(Epichloe_sylvatica_200751,Epichloe_typhina_200739)),(Epichloe_typhina_201669,(Neotyphodium_typhinum_var._canariense_Lc4,Epichloe_typhina_201667)))),(((((Epichloe_bromicola_200749,Epichloe_bromicola_201559),Epichloe_bromicola_200750),(Neotyphodium_occultans_Lro1b,(Neotyphodium_occultans_Lrr1b,Neotyphodium_occultans_Lrr2b))),(Epichloe_elymi_200850,Epichloe_elymi_201551)),(Epichloe_glyceriae_200747,Epichloe_glyceriae_200755)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3608] END; BEGIN TREES; TITLE Tb5744; LINK TAXA = TaxaForAnalysisStep968; TREE Fig._6B = [&R] (Epichloe_amarillans_200743,(Epichloe_amarillans_200744,((Epichloe_baconii_200745,(((Epichloe_baconii_76552,Epichloe_baconii_90167),((((Neotyphodium_occultans_Lm1a,Neotyphodium_occultans_Lro1a),Neotyphodium_occultans_Lrr1a,Neotyphodium_occultans_Lrr2a),Neotyphodium_coenophialum_90664_tub2.4),Neotyphodium_sp_FaTG2_e41_tub2.4)),(Epichloe_festucae_90661,Neotyphodium_coenophialum_90664_tub2.2))),(((Epichloe_brachyelytri_200752,Epichloe_brachyelytri_201561),(((((((Epichloe_clarkii_200742,Epichloe_typhina_200736),Neotyphodium_sp._FaTG3_Tf18_tub2.5),(Epichloe_typhina_200851,Epichloe_typhina_201666)),((Epichloe_typhina_200738,(Epichloe_typhina_200849,Epichloe_typhina_E348)),Epichloe_typhina_200740)),Epichloe_sylvatica_200748),(Epichloe_sylvatica_200751,Epichloe_typhina_200739)),(Epichloe_typhina_201669,(Neotyphodium_typhinum_var._canariense_Lc4,Epichloe_typhina_201667)))),((((Epichloe_bromicola_200749,(Epichloe_bromicola_200750,Epichloe_bromicola_201559)),(Neotyphodium_occultans_Lro1b,(Neotyphodium_occultans_Lrr1b,Neotyphodium_occultans_Lrr2b))),(Epichloe_elymi_200850,Epichloe_elymi_201551)),(Epichloe_glyceriae_200747,Epichloe_glyceriae_200755)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3605] END;