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Matrix 46675 of Study 22409
Citation title: "Tangled history of a multigene family: the evolution of Isopentenyltransferase genes".
Study name: "Tangled history of a multigene family: the evolution of Isopentenyltransferase genes".
This study is part of submission 22409
(Status: Published).
Matrices
Title: Isopentenyltransferase genes PfamIPPT N40 seed
Description: PfamIPPT N-terminus 40AA extended seed alighment
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Ostreococcus lucimarinus A4RZH4_OSTLU | (none) | RAKVLVVTGPTAIGKSAVAIAMARARRERR |
| Caenorhabditis briggsae A8XZP3_CAEBR | (none) | KTPIIFVIGCTGTGKSDLGVAIAKKY---- |
| Populus trichocarpa B9GGV0_POPTR | (none) | KEKLIVISGPTGSGKTRLALELAKRL---- |
| Chitinophaga pinensis C7PEG4_CHIPD | (none) | -KSIIIVAGPTASGKTAKAIEVAQHF---- |
| Desulfohalobium retbaense C8X3G1_DESRD | (none) | PPPIVCVVGPTGTGKNRLALHLAQSL---- |
| Halothiobacillus neapolitanus D0KVK6_HALNC | (none) | QKPVLALLGPTASGKTAVALELAAQY---- |
| Naegleria gruberi D2V7G0_NAEGR | (none) | LPKIIVCAGSTGVGKSALAFALAKYIKEKE |
| Conexibacter woesei D3FE57_CONWI | (none) | LASVIALFGPTGIGKTAVAVALARRLRAGG |
| Puniceispirillum marinum D5BRR0_PUNMI | (none) | IKHYIMIAGPTASGKSKLAIEMARRT---- |
| Bacillus tusciae D5WPS6_KYRT2 | (none) | -NPVLFIVGPTATGKSDVAIRVAKQI---- |
| Starkeya novella D7A7G1_STAND | (none) | RPRAVLIAGPTASGKSALALSLAERA---- |
| Selaginella moellendorffii D8SPM7_SELML | (none) | ARRVIVISGPTAVGKSRLALALAQRL---- |
| Thermosediminibacter oceani D9S3G8_THEOJ | (none) | KKLLLAIVGPTAVGKTEIAIEVALRL---- |
| Olsenella uli E1R0A0_OLSUV | (none) | AMPVICIVGPTASGKSSLADRVALAL---- |
| Leadbetterella byssophila E4RYG4_LEAB4 | (none) | KANLVVLVGPTAVGKTALSVRLAKKW---- |
| Paludibacter propionicigenes E4T0B1_PALPW | (none) | KPTLLVLLGPTGVGKTKLSLSLAEHF---- |
| Desulfobulbus propionicus E8RDC2_DESPD | (none) | ATPVLVLVGPTAIGKTALSLAIGERF---- |
| Cellulophaga lytica F0RF82_CELLC | (none) | TKTLIAVVGPTAIGKTKLAITLAQHF---- |
| Syntrophobotulus glycolicus F0SZH7_SYNGF | (none) | KGPLIIIVGPTAVGKSDLGMELARKL---- |
| Dictyostelium purpureum F1A4W7_DICPU | (none) | KPKILVLSGSTGAGKSRVAIELAKQI---- |
| Polymorphum gilvum F2J2B8_POLGS | (none) | APGALLIAGPTASGKSALALDLACRL---- |
| Thermodesulfatator indicus F8AA88_THEID | (none) | NIPLIAVVGPTGVGKTEVGIFLGEHL---- |
| Thermodesulfobacterium geofontis F8C2V7_THEGP | (none) | -KKVIAIVGPTGVGKSELAVFLGEKL---- |
| Parachlamydia acanthamoebae F8KZF2_PARAV | (none) | RKRVIVISGPTGCGKTAFSLKLAQEI---- |
| Owenweeksia hongkongensis G8R6J7_OWEHD | (none) | NKTAIFIAGPTAVGKTDVAIKIAEWL---- |
| Jonquetella anthropi H0UIN0_9BACT | (none) | RLKVLAVIGPTAVGKTALSLELADRL---- |
| Caldithrix abyssi H1XVJ9_9BACT | (none) | KRVVHFIVGPTAIGKTFLSALLAEKI---- |
| Ciona savignyi H2YDP6_CIOSA | (none) | PKKLVVVLGATGAGKSKLALDIATRC---- |
| Phytophthora ramorum H3GNQ5_PHYRM | (none) | LRKVLVVIGTTGAGKTKLSVDLAKAV---- |
| Fibrella aestuarina I0K5J4_9BACT | (none) | TKTLIVIAGPTGVGKTAFCVRLARRL---- |
| Brachypodium distachyon I1GV33_BRADI | (none) | RSKVIVISGPTGAGKSRLALEVARRL---- |
| Arabidopsis thaliana IPT9_ARATH | (none) | KEKVIVISGPTGAGKSRLAMELAKRL---- |
| Oryza brachyantha J3MHV5_ORYBR | (none) | KNKVIVISGPTGAGKTRLALDLAKRL---- |
| Solanum lycopersicum K4DCV4_SOLLC | (none) | KEKVIVISGPTGAGKSKLALELAKRI---- |
| Bifidobacterium asteroides K4ILF2_BIFAP | (none) | EPRIVSIVGPTASGKTALGVALAQALQARG |
| Thioalkalivibrio nitratireducens L0E1C1_THIND | (none) | -HRVILLMGPTASGKSALAMELAEAI---- |
| Clostridium stercorarium L7VMA4_CLOSH | (none) | DKTVIVIAGPTASGKTDLAINLALET---- |
| Ilumatobacter coccineus M5A3P6_9ACTN | (none) | -PPRVAIVGSTASGKSAVAMAVAERM---- |
| Pneumocystis murina M7P9B6_PNEMU | (none) | LRNICVIIGATGSGKSKLGVALAKAF---- |
| Eutypa lata M7T4Q1_EUTLA | (none) | ------------------------------ |
| Acidiphilium cryptum MIAA_ACICJ | (none) | ARPLLIVAGPTASGKSALALAAAQRF---- |
| Agrobacterium vitis MIAA_AGRVS | (none) | NFDAILITGPTASGKSALALRLAAEV---- |
| Alcanivorax borkumensis MIAA_ALCBS | (none) | SLPILLLMGPTCSGKTALAIEAAQTL---- |
| Amoebophilus asiaticus MIAA_AMOA5 | (none) | NKYLIVVVGPTAVGKTDLCIYIAQYF---- |
| Aquifex aeolicus MIAA_AQUAE | (none) | --KILVIGGPTAIGKSDLACCVAQKL---- |
| Bacillus clausii MIAA_BACSK | (none) | QEPLIAIVGPTAVGKTALGIELAKTF---- |
| Bacillus subtilis MIAA_BACSU | (none) | KQPVVILVGPTAVGKTNLSIQLAKSL---- |
| Baumannia cicadellinicola MIAA_BAUCH | (none) | LPIAIFIIGPTASGKTNLAIKLRQKL---- |
| Borrelia burgdorferi MIAA_BORBU | (none) | EDRVVFIFGPTAVGKSNILFHFPKN----- |
| Chlorobium phaeobacteroides MIAA_CHLPD | (none) | QKTILAILGPTASGKSALAFSIAKEI---- |
| Chlamydia trachomatis MIAA_CHLTR | (none) | KRTVILLAGPTGSGKTAVSLKLAPLV---- |
| Clostridium tetani MIAA_CLOTE | (none) | -KDLFILSGPTAVGKTEISLNLAKAL---- |
| Coprothermobacter proteolyticus MIAA_COPPD | (none) | GKPLISILGPTGVGKTDLAFRLACSL---- |
| Cyanothece sp. MIAA_CYAP4 | (none) | RPGLIVICGPTATGKSGLAIALAEYL---- |
| Desulfatibacillum alkenivorans MIAA_DESAA | (none) | KEKIVVIAGPTGVGKSASTLPLAREF---- |
| Escherichia coli MIAA_ECOLI | (none) | LPKAIFLMGPTASGKTALAIELRKIL---- |
| Exiguobacterium sp. MIAA_EXISA | (none) | KTPVVVIVGPTAVGKTKTGIELAKAF---- |
| Finegoldia magna MIAA_FINM2 | (none) | RKKCIVIVGPTGVGKTRLSIFLAKRL---- |
| Fusobacterium nucleatum MIAA_FUSNN | (none) | LNKAIVIAGPTGVGKTKISIDLAKKL---- |
| Haemophilus influenzae MIAA_HAEIN | (none) | KPTAIFLMGPTASGKTDLAIQLRSQL---- |
| Halothermothrix orenii MIAA_HALOH | (none) | NSTLIVILGPTAVGKTSLSLQLARDI---- |
| Helicobacter pylori MIAA_HELPY | (none) | PKKLIALLGPSGSGKSALSIELAQEL---- |
| Herminiimonas arsenicoxydans MIAA_HERAR | (none) | KPLVVSIMGPTASGKTATALAIAEQI---- |
| Hyphomonas neptunium MIAA_HYPNA | (none) | -HPAILIHGPTASGKSALAIELARKL---- |
| Leifsonia xyli MIAA_LEIXX | (none) | ------------------------------ |
| Listeria monocytogenes MIAA_LISMO | (none) | KIPVIVIVGPTAVGKTSLSIELAKKL---- |
| Magnetococcus marinus MIAA_MAGMM | (none) | --------GPTASGKTGLALHLAEHF---- |
| Methylacidiphilum infernorum MIAA_METI4 | (none) | NKPVFFLVGSTGIGKTAIAHRIADEI---- |
| Microcystis aeruginosa MIAA_MICAN | (none) | LPILIVICGATATGKSSLALQLAEKF---- |
| Mycobacterium leprae MIAA_MYCLE | (none) | ----LAIVGPTGVGKSELALDVIERLGGQV |
| Myxococcus xanthus MIAA_MYXXD | (none) | RPLLTVIAGPTASGKTALAIALAQRA---- |
| Neisseria meningitidis MIAA_NEIMB | (none) | TPKAFALLGPTAGGKTALALKIAETL---- |
| Nocardioides sp. MIAA_NOCSJ | (none) | RTPIVAVVGATASGKTGLSLDLAERL---- |
| Oceanobacillus iheyensis MIAA_OCEIH | (none) | KETVISIVGPTAVGKSLLGIEMAKRF---- |
| Prochlorococcus marinus MIAA_PROMA | (none) | KPLVIVLLGPTASGKTDLAIQIAKKI---- |
| Pseudomonas stutzeri MIAA_PSEU5 | (none) | LPPAIFLMGPTASGKTDLALELARVL---- |
| Rhodopirellula baltica MIAA_RHOBA | (none) | FDDVIVLTGPTASGKTELALRVAETLAART |
| Rhodobacter sphaeroides MIAA_RHOS4 | (none) | PDRPVLIAGPTASGKSALAARLVEDG---- |
| Saccharopolyspora erythraea MIAA_SACEN | (none) | APRLLAIVGPTGTGKSELAVDLAEEL---- |
| Solibacter usitatus MIAA_SOLUE | (none) | --PLVAVAGPTGSGKSELALLIAEKF---- |
| Staphylococcus carnosus MIAA_STACT | (none) | KPLLVVIVGPTAVGKTELSIELAKKI---- |
| Streptococcus agalactiae MIAA_STRA5 | (none) | KIKLIAVVGPTAVGKTALGIELAKTF---- |
| Streptomyces coelicolor MIAA_STRCO | (none) | APRVIAVVGPTAAGKSDLGVFLAQRL---- |
| Symbiobacterium thermophilum MIAA_SYMTH | (none) | KLPLVVLVGPTAVGKTALSVAVAQAV---- |
| Synechococcus elongatus MIAA_SYNE7 | (none) | KPGLIVLCGPTAAGKSSLAIAIAQRL---- |
| Synechocystis sp. MIAA_SYNY3 | (none) | VPPLIVICGTTASGKSQLALDLAQRL---- |
| Thermobifida fusca MIAA_THEFY | (none) | -STVIAVVGPTAVGKSDLSVALALRLTEHG |
| Thermomicrobium roseum MIAA_THERP | (none) | RKPVVALVGPTSVGKTATAIELALTF---- |
| Geobacter lovleyi MIAA1_GEOLS | (none) | KPRVLVIAGPTASGKSALALDLAVAL---- |
| Geobacter bemidjiensis MIAA2_GEOBB | (none) | IPNLLVILGATASGKTRLGVQLAGRL---- |
| Saccharomyces cerevisiae MOD5_YEAST | (none) | SKKVIVIAGTTGVGKSQLSIQLAQKF---- |
| Clostridium sp. R5AGI8_9CLOT | (none) | NKVVACIVGPTASGKSALAVSLATRF---- |
| Prevotella sp. R5CU75_9BACT | (none) | ----ITILGPTASGKTSFAAALAAEI---- |
| Acetobacter sp. R5Y045_9PROT | (none) | TSEIIVIAGPTASGKSGLALALAERL---- |
| Clostridium sp. R6GSB0_9CLOT | (none) | KIDVVAVVGPTACGKTKLSIELAKQL---- |
| Firmicutes bacterium R6H037_9FIRM | (none) | KIKVLIISGPTAVGKSAFGVKAAQLL---- |
| Clostridium sp. R6PD01_9CLOT | (none) | KKNIIAIAGPTASGKTALAVEIAKIF---- |
| Ruminococcus sp. R6XCW7_9FIRM | (none) | -KKAIVIIGATASGKSALAAELCKRF---- |
| Firmicutes bacterium R6YST1_9FIRM | (none) | -KKVIVITGPTAVGKTKLSIEIAKRL---- |
| Firmicutes bacterium R7BNX8_9FIRM | (none) | KKKLIVLTGPTAVGKTDLSIRLAKEV---- |
| Mycoplasma sp. R7NFF0_9MOLU | (none) | ---IICIVGPTGVGKTKLSVELAKKY---- |
| Rhizophagus irregularis U9SSW7_RHIID | (none) | -TNLISVPGTTGVGKSDLGVQLAKTL---- |
| Halorhodospira halochloris W8KS79_HALHR | (none) | --------GPTATGKTELAVEWAQRL---- |
Columns
None of the columns has a description.
