TreeBASE Search-Taxa in tree 48786 of the phylogeny or phylogenetic data in study 11918

@ARTICLE{TreeBASE2Ref20041, author = {Praveen Rahi and Riti Kapoor and J.P. W Young and Arvind Gulati}, title = {A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas }, year = {2011}, keywords = {Biogeography, Evolutionary relationships, Indian trans-Himalayas, Rhizobium leguminosarum bv. viciae }, doi = {}, url = {http://}, pmid = {}, journal = {Molecular Ecology }, volume = {}, number = {}, pages = {}, abstract = {Evolutionary relationships of 120 root-nodulating bacteria isolated from the nodules of Pisum sativum cultivated at 22 different locations of the trans-Himalayan valleys of Lahaul and Spiti in the state of Himachal Pradesh of India were studied using 16S rRNA gene PCR-RFLP, ERIC-PCR, sequencing of 16S rRNA, atpD, recA, nodC and nifH genes, carbon-source utilization pattern (BIOLOG?), and whole-cell fatty acid profiling. The results demonstrated that all isolates belonged to Rhizobium leguminosarum biovar viciae (Rlv). Isolates from the two valleys were clearly separated on the basis of ERIC fingerprints, carbon-source utilization pattern, and whole-cell fatty acid methyl esters. Phylogenetic analysis of atpD, recA, nodC and nifH genes revealed a common Rlv sublineage in Spiti valley. Lahaul valley isolates were represented by 3 sequence types of atpD and recA genes, and four sequence types of nodC and nifH genes. Genotypes from the two valleys were completely distinct, except for two Lahaul isolates that shared nodC and nifH sequences with Spiti isolates but were otherwise more similar to other Lahaul isolates. Isolates from the two highest Spiti valley sites (above 4000m) had a distinctive whole-cell fatty acid profile. Spiti valley isolates are closely related to Rlv sublineages from Xinjiang and Shanxi provinces in China, while Lahaul valley isolates resemble cosmopolitan strains of the western world. The high mountain pass between these valleys represents a boundary between two distinct microbial populations. } }

Delicious

Connotea

Taxa for tree 48786 of Study 11918

Citation title: "A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas ".

Study name: "A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas ".

This study is part of submission 11918 (Status: Published).

Taxa

Back Return to complete tree view

ID	Taxon Label	NCBI taxid	uBIO namebankID
635303	Rhizobium etli USDA9032 AJ294404 AJ294375	29449	3865954
635352	Rhizobium galegae USDA4128 AJ294406 AJ294378	399	2558220
635307	Rhizobium leguminosarum CCBAU23102 ex. Pisum sativum China EU170571 EU255216	384	3865962
635323	Rhizobium leguminosarum CCBAU25092 ex. Vicia unijuga Chnia EU170574 EU255220	384	3865962
635353	Rhizobium leguminosarum sv. trifolii ATCC 14480 EF113150 EF113135	384	3865962
635313	Rhizobium leguminosarum sv. trifolii WSM2304 CP001191	384	3865962
635302	Rhizobium leguminosarum sv. viciae BIHB1107 JF759794 JF759764	384	3865962
635334	Rhizobium leguminosarum sv. viciae BIHB1108 JF759795 JF759765	384	3865962
635358	Rhizobium leguminosarum sv. viciae BIHB1112 JF759796 JF759766	384	3865962
635341	Rhizobium leguminosarum sv. viciae BIHB1116 JF759797 JF759767	384	3865962
635331	Rhizobium leguminosarum sv. viciae BIHB1124 JF759798 JF759768	384	3865962
635328	Rhizobium leguminosarum sv. viciae BIHB1127 JF759799 JF759769	384	3865962
635295	Rhizobium leguminosarum sv. viciae BIHB1132 JF759800 JF759770	384	3865962
635327	Rhizobium leguminosarum sv. viciae BIHB1134 JF759801 JF759771	384	3865962
635332	Rhizobium leguminosarum sv. viciae BIHB1136 JF759802 JF759772	384	3865962
635306	Rhizobium leguminosarum sv. viciae BIHB1138 JF759803 JF759773	384	3865962
635319	Rhizobium leguminosarum sv. viciae BIHB1140 JF759804 JF759774	384	3865962
635316	Rhizobium leguminosarum sv. viciae BIHB1142 JF759805 JF759775	384	3865962
635298	Rhizobium leguminosarum sv. viciae BIHB1148 JF759806 JF759776	384	3865962
635357	Rhizobium leguminosarum sv. viciae BIHB1152 JF759807 JF759777	384	3865962
635322	Rhizobium leguminosarum sv. viciae BIHB1156 JF759808 JF759778	384	3865962
635318	Rhizobium leguminosarum sv. viciae BIHB1157 JF759809 JF759779	384	3865962
635339	Rhizobium leguminosarum sv. viciae BIHB1160 JF759810 JF759780	384	3865962
635294	Rhizobium leguminosarum sv. viciae BIHB1162 JF759811 JF759781	384	3865962
635342	Rhizobium leguminosarum sv. viciae BIHB1164 JF759812 JF759782	384	3865962
635344	Rhizobium leguminosarum sv. viciae BIHB1167 JF759813 JF759783	384	3865962
635300	Rhizobium leguminosarum sv. viciae BIHB1175 JF759814 JF759784	384	3865962
635301	Rhizobium leguminosarum sv. viciae BIHB1180 JF759815 JF759785	384	3865962
635326	Rhizobium leguminosarum sv. viciae BIHB1185 JF759816 JF759786	384	3865962
635314	Rhizobium leguminosarum sv. viciae BIHB1192 JF759817 JF759787	384	3865962
635321	Rhizobium leguminosarum sv. viciae BIHB1194 JF759818 JF759788	384	3865962
635324	Rhizobium leguminosarum sv. viciae BIHB1207 JF759819 JF759789	384	3865962
635312	Rhizobium leguminosarum sv. viciae BIHB1209 JF759820 JF759790	384	3865962
635308	Rhizobium leguminosarum sv. viciae BIHB1212 JF759821 JF759791	384	3865962
635320	Rhizobium leguminosarum sv. viciae BIHB1217 JF759822 JF759792	384	3865962
635333	Rhizobium leguminosarum sv. viciae BIHB1220 JF759823 JF759793	384	3865962
635347	Rhizobium leguminosarum sv. viciae CCBAU03316 ex. Vicia faba China GQ323602 GQ323678	384	3865962
635338	Rhizobium leguminosarum sv. viciae CCBAU03317 ex. Vicia faba China GQ323594 GQ323670	384	3865962
635349	Rhizobium leguminosarum sv. viciae CCBAU03321 ex. Vicia faba China GQ323597 GQ323673	384	3865962
635325	Rhizobium leguminosarum sv. viciae CCBAU03322 ex. Vicia faba China GQ323596 GQ323672	384	3865962
635329	Rhizobium leguminosarum sv. viciae CCBAU11080 ex. Vicia faba China GQ323590 GQ323666	384	3865962
635343	Rhizobium leguminosarum sv. viciae CCBAU23131 ex. Vicia faba China GQ323585 GQ323661	384	3865962
635335	Rhizobium leguminosarum sv. viciae CCBAU43240 ex. Vicia faba China GQ323584 GQ323660	384	3865962
635305	Rhizobium leguminosarum sv. viciae CCBAU53093-2 ex. Vicia faba China GQ323588 GQ323664	384	3865962
635345	Rhizobium leguminosarum sv. viciae CCBAU71124 ex. Vicia sativa China EU170582 EU255228	384	3865962
635346	Rhizobium leguminosarum sv. viciae CCBAU73064 ex. Vicia sativa China EU170584 EU255231	384	3865962
635315	Rhizobium leguminosarum sv. viciae CCBAU73113 ex. Vicia faba China GQ323587 GQ323663	384	3865962
635309	Rhizobium leguminosarum sv. viciae CCBAU75042 ex. Vicia faba China GQ323600 GQ323676	384	3865962
635354	Rhizobium leguminosarum sv. viciae CCBAU81106 ex. Vicia faba China GQ323595 GQ323671	384	3865962
635350	Rhizobium leguminosarum sv. viciae CCBAU81107 ex. Vicia faba China GQ323599 GQ323675	384	3865962
635299	Rhizobium leguminosarum sv. viciae CCBAU83268 ex. Vicia faba China GQ323598 GQ323674	384	3865962
635351	Rhizobium leguminosarum sv. viciae CCBAU85004 ex. Vicia faba China GQ323593 GQ323669	384	3865962
635337	Rhizobium leguminosarum sv. viciae J-1 ex. Vicia faba Jordan GQ323615 GQ323691	384	3865962
635340	Rhizobium leguminosarum sv. viciae Nvf3 ex. Vicia faba Jordan GQ323618 GQ323694	384	3865962
635317	Rhizobium leguminosarum sv. viciae Nvf4 ex. Vicia faba Jordan GQ323619 GQ323695	384	3865962
635356	Rhizobium leguminosarum sv. viciae PEVF05 ex. Vicia faba Peru EF113140 EF113125	384	3865962
635336	Rhizobium leguminosarum sv. viciae USDA2370 ex. Pisum sativum AJ294405 AJ294376	384	3865962
635304	Rhizobium leguminosarum sv. viciae USDA2489 ex. Vicia faba Canada GQ323608 GQ323684	384	3865962
635310	Rhizobium leguminosarum sv. viciae USDA2499 ex. Vicia faba Spain GQ323611 GQ323687	384	3865962
635355	Rhizobium leguminosarum sv. viciae USDA2500 ex. Vicia faba Spain GQ323612 GQ323688	384	3865962
635311	Rhizobium leguminosarum sv. viciae USDA2502 ex. Vicia faba Spain GQ323613 GQ323689	384	3865962
635293	Rhizobium leguminosarum sv. viciae USDA2503 ex. Vicia faba Spain GQ323614 GQ323690	384	3865962
635330	Rhizobium lusitanum p1-7 DQ431671 DQ431674	293958	5980296
635296	Rhizobium pisi DSM 30132 ex. Pisum sativum EF113149 EF113134
635297	Rhizobium sp. PEPSM 18 EF113148 EF113133
635348	Rhizobium tropici USDA9030 AJ294397 AJ294373	398	2558221