TreeBASE Search-Taxa in tree 48787 of the phylogeny or phylogenetic data in study 11918

@ARTICLE{TreeBASE2Ref20041, author = {Praveen Rahi and Riti Kapoor and J.P. W Young and Arvind Gulati}, title = {A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas }, year = {2011}, keywords = {Biogeography, Evolutionary relationships, Indian trans-Himalayas, Rhizobium leguminosarum bv. viciae }, doi = {}, url = {http://}, pmid = {}, journal = {Molecular Ecology }, volume = {}, number = {}, pages = {}, abstract = {Evolutionary relationships of 120 root-nodulating bacteria isolated from the nodules of Pisum sativum cultivated at 22 different locations of the trans-Himalayan valleys of Lahaul and Spiti in the state of Himachal Pradesh of India were studied using 16S rRNA gene PCR-RFLP, ERIC-PCR, sequencing of 16S rRNA, atpD, recA, nodC and nifH genes, carbon-source utilization pattern (BIOLOG?), and whole-cell fatty acid profiling. The results demonstrated that all isolates belonged to Rhizobium leguminosarum biovar viciae (Rlv). Isolates from the two valleys were clearly separated on the basis of ERIC fingerprints, carbon-source utilization pattern, and whole-cell fatty acid methyl esters. Phylogenetic analysis of atpD, recA, nodC and nifH genes revealed a common Rlv sublineage in Spiti valley. Lahaul valley isolates were represented by 3 sequence types of atpD and recA genes, and four sequence types of nodC and nifH genes. Genotypes from the two valleys were completely distinct, except for two Lahaul isolates that shared nodC and nifH sequences with Spiti isolates but were otherwise more similar to other Lahaul isolates. Isolates from the two highest Spiti valley sites (above 4000m) had a distinctive whole-cell fatty acid profile. Spiti valley isolates are closely related to Rlv sublineages from Xinjiang and Shanxi provinces in China, while Lahaul valley isolates resemble cosmopolitan strains of the western world. The high mountain pass between these valleys represents a boundary between two distinct microbial populations. } }

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Taxa for tree 48787 of Study 11918

Citation title: "A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas ".

Study name: "A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas ".

This study is part of submission 11918 (Status: Published).

Taxa

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ID	Taxon Label	NCBI taxid	uBIO namebankID
634823	Rhizobium etli sv. phaseoli VikingI AF217262	29449	3865954
634884	Rhizobium galegae HAMBI 1174 X87578	399	2558220
634876	Rhizobium gallicum sv. gallicum R602sp AF217266	56730	3865956
634883	Rhizobium gallicum sv. phaseoli PhD12 AF217265	56730	3865956
634874	Rhizobium giardinii sv. phaseoli H251 AF217264	56731	3865957
634867	Rhizobium leguminosarum ALG1 ex. Vicia articulata Spain GQ866894	384	3865962
634855	Rhizobium leguminosarum ALG3 ex. Vicia articulata Spain GU014308	384	3865962
634826	Rhizobium leguminosarum ALM3 ex. Lathyrus sativus Spain GU014307	384	3865962
634816	Rhizobium leguminosarum ATCC 14480 FJ895269	384	3865962
634827	Rhizobium leguminosarum Alm1 ex. Lathyrus sativus Spain GQ866896	384	3865962
634821	Rhizobium leguminosarum CCBAU01152 ex. Astragalus membranaceous China EU753428	384	3865962
634824	Rhizobium leguminosarum CCBAU05139 ex. Astragalus dahuricus China EU753426	384	3865962
634866	Rhizobium leguminosarum CCBAU05181 ex. Astragalus melilotoides China EU418391	384	3865962
634820	Rhizobium leguminosarum CCBAU23102 ex. Pisum sativum China EU177600	384	3865962
634843	Rhizobium leguminosarum CCBAU25092 ex. Vicia unijuga China EU177604	384	3865962
634857	Rhizobium leguminosarum CCBAU43200 ex. Lablab purpureus China GU433568	384	3865962
634880	Rhizobium leguminosarum CCBAU5086 ex. Astragalus melilotoides China EU753427	384	3865962
635360	Rhizobium leguminosarum CCBAU5086 ex. Astragalus melilotoides China EU753427	384	3865962
634819	Rhizobium leguminosarum CCBAU71124 ex. Vicia sativa China EU177611	384	3865962
634868	Rhizobium leguminosarum CCBAU73064 ex. Vicia sativa China EU177613	384	3865962
634822	Rhizobium leguminosarum H2 ex. Vicia sativa Spain GQ866900	384	3865962
634839	Rhizobium leguminosarum H3 ex. Vicia faba Spain GU014311	384	3865962
634873	Rhizobium leguminosarum HB2 ex. Vicia faba Spain GU014300	384	3865962
634848	Rhizobium leguminosarum LEN4 ex. Lens culinaris Spain GU014314	384	3865962
634877	Rhizobium leguminosarum PEVF 02 ex. Vicia faba Peru FJ596026	384	3865962
634830	Rhizobium leguminosarum PEVF01 ex. Vicia faba Peru FJ596025	384	3865962
634878	Rhizobium leguminosarum PEVF05 ex. Vicia faba Peru FJ596028	384	3865962
634872	Rhizobium leguminosarum RVS03 ex. Vicia sativa Spain FJ596018	384	3865962
634861	Rhizobium leguminosarum RVS11 ex. Vicia sativa Spain FJ596019	384	3865962
634847	Rhizobium leguminosarum V1 ex. Vicia sativa Spain GQ866899	384	3865962
634842	Rhizobium leguminosarum VAS602 ex. Vicia angustifolia South Korea FJ715814	384	3865962
634815	Rhizobium leguminosarum VT608 ex. Vicia tetrasperma South Korea FJ715819	384	3865962
635359	Rhizobium leguminosarum VT608 ex. Vicia tetrasperma South Korea FJ715819	384	3865962
634809	Rhizobium leguminosarum Y1 ex. Vicia ervilia Spain GQ866892	384	3865962
634862	Rhizobium leguminosarum sv. phaseoli H132 AF217263	384	3865962
634886	Rhizobium leguminosarum sv. trifolii T-1 GQ866893	384	3865962
634870	Rhizobium leguminosarum sv. trifolii USDA2071 AF217271	384	3865962
634833	Rhizobium leguminosarum sv. trifolii WSM1325 CP001623	384	3865962
634869	Rhizobium leguminosarum sv. trifolii WSM2304 CP001192	384	3865962
634845	Rhizobium leguminosarum sv. viciae BIHB1107 JF759734	384	3865962
634825	Rhizobium leguminosarum sv. viciae BIHB1108 JF759735	384	3865962
634882	Rhizobium leguminosarum sv. viciae BIHB1112 JF759736	384	3865962
634875	Rhizobium leguminosarum sv. viciae BIHB1116 JF759737	384	3865962
634828	Rhizobium leguminosarum sv. viciae BIHB1124 JF759738	384	3865962
634838	Rhizobium leguminosarum sv. viciae BIHB1127 JF759739	384	3865962
634840	Rhizobium leguminosarum sv. viciae BIHB1132 JF759740	384	3865962
634835	Rhizobium leguminosarum sv. viciae BIHB1134 JF759741	384	3865962
634849	Rhizobium leguminosarum sv. viciae BIHB1136 JF759742	384	3865962
634864	Rhizobium leguminosarum sv. viciae BIHB1138 JF759743	384	3865962
634832	Rhizobium leguminosarum sv. viciae BIHB1140 JF759744	384	3865962
634871	Rhizobium leguminosarum sv. viciae BIHB1142 JF759745	384	3865962
634841	Rhizobium leguminosarum sv. viciae BIHB1148 JF759746	384	3865962
634854	Rhizobium leguminosarum sv. viciae BIHB1152 JF759747	384	3865962
634834	Rhizobium leguminosarum sv. viciae BIHB1156 JF759748	384	3865962
634814	Rhizobium leguminosarum sv. viciae BIHB1157 JF759749	384	3865962
634811	Rhizobium leguminosarum sv. viciae BIHB1160 JF759750	384	3865962
634844	Rhizobium leguminosarum sv. viciae BIHB1162 JF759751	384	3865962
634858	Rhizobium leguminosarum sv. viciae BIHB1164 JF759752	384	3865962
634856	Rhizobium leguminosarum sv. viciae BIHB1167 JF759753	384	3865962
634863	Rhizobium leguminosarum sv. viciae BIHB1175 JF759754	384	3865962
634812	Rhizobium leguminosarum sv. viciae BIHB1180 JF759755	384	3865962
634879	Rhizobium leguminosarum sv. viciae BIHB1185 JF759756	384	3865962
634860	Rhizobium leguminosarum sv. viciae BIHB1192 JF759757	384	3865962
634810	Rhizobium leguminosarum sv. viciae BIHB1194 JF759758	384	3865962
634859	Rhizobium leguminosarum sv. viciae BIHB1207 JF759759	384	3865962
634836	Rhizobium leguminosarum sv. viciae BIHB1209 JF759760	384	3865962
634837	Rhizobium leguminosarum sv. viciae BIHB1212 JF759761	384	3865962
634865	Rhizobium leguminosarum sv. viciae BIHB1217 JF759762	384	3865962
634813	Rhizobium leguminosarum sv. viciae BIHB1220 JF759763	384	3865962
634829	Rhizobium leguminosarum sv. viciae RP277 Morocco DQ413002	384	3865962
634852	Rhizobium leguminosarum sv. viciae USDA2370 ex. Pisum sativum FJ596038	384	3865962
634881	Rhizobium leguminosarum sv. viciae USDA3841 ex. Pisum sativum UK AM236080	384	3865962
634846	Rhizobium sp. MVP01 ex. Vicia sativa Spain FJ596022	391	9733188
634885	Rhizobium sp. MVP05 ex. Vicia sativa Spain FJ596023	391	9733188
634831	Rhizobium sp. MVP07 ex. Vicia sativa Spain FJ596024	391	9733188
634851	Rhizobium sp. PEVF 08 ex. Vicia faba Peru FJ596029
634817	Rhizobium sp. PEVF03 ex. Vicia faba Peru FJ596027	391	9733188
634850	Rhizobium sp. PEVF10 ex. Vicia faba Peru FJ596030	391	9733188