@ARTICLE{TreeBASE2Ref23327,
author = {Carl J. Rothfels and Anne K. Johnson and Michael D. Windham and Kathleen M. Pryer},
title = {Low-copy nuclear data confirm rampant allopolyploidy in the Cystopteridaceae (Polypodiales)},
year = {2014},
keywords = {amplicon cloning, Cystopteris fragilis, fern phylogeny, Gymnocarpium, hybridization, reticulate evolution, species complex},
doi = {},
url = {http://},
pmid = {},
journal = {Taxon},
volume = {},
number = {},
pages = {},
abstract = {Here we present the first nuclear phylogeny for Cystopteridaceae (Polypodiales), using the single-copy locus gapCp ?short.? This phylogeny corroborates broad results from plastid data in demonstrating strong support for the monophyly of the family?s three genera?Cystopteris, Acystopteris, and Gymnocarpium?and of the major groups within Cystopteris (C. montana, the sudetica and bulbifera clades, and the fragilis complex). In addition, it confirms the rampant hybridization (allopolyploidy) that has been long suspected within both Cystopteris and Gymnocarpium. In some cases, these data provide the first DNA sequence-based evidence for previous hypotheses of polyploid species origins (such as the cosmopolitan G. dryopteris being an allotetraploid derivative of the diploids G. appalachianum and G. disjunctum). Most of the allopolyploids, however, have no formal taxonomic names. This pattern is particularly strong within the C. fragilis complex, where our results imply that the eight included accessions of ?C. fragilis? represent at least six distinct allopolyploid taxa.}
}
Taxa for matrix 22809 of Study 15964

Citation title:
"Low-copy nuclear data confirm rampant allopolyploidy in the Cystopteridaceae (Polypodiales)".

Study name:
"Low-copy nuclear data confirm rampant allopolyploidy in the Cystopteridaceae (Polypodiales)".

This study is part of submission 15964
(Status: Published).
Taxa
Return to matrix row view
| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 1524991 |
Acystopteris taiwaniana 4870 c2 3 4 6 [5] |
|
9425649
|
| 1524998 |
Acystopteris tenuisecta 4831 Tai c1 4 6 [3] |
|
9034475
|
| 1524974 |
Cystopteris bulbifera 5836 Arz c1 5 7 627 |
|
2644649
|
| 1525024 |
Cystopteris bulbifera 6116 On c12 [2_4_5_9_14_10_11_15_1_3_8_7] |
|
2644649
|
| 1525007 |
Cystopteris fragilis 5316 CR c1 2 9 [12_14 5 6 8 11_4_7_10] |
32112
|
2644650
|
| 1525008 |
Cystopteris fragilis 5840 Swd c2 4 [1_9] |
32112
|
2644650
|
| 1525023 |
Cystopteris fragilis 5840 Swd c6 8 10 [3_5_7] |
32112
|
2644650
|
| 1525021 |
Cystopteris fragilis 5851 Ut c1 2 12 13 [3_4_5_9] |
32112
|
2644650
|
| 1524945 |
Cystopteris fragilis 5851 Ut c10 576 |
32112
|
2644650
|
| 1525003 |
Cystopteris fragilis 5851 Ut c7 11 14 16 [6_8] |
32112
|
2644650
|
| 1524849 |
Cystopteris fragilis 5951 Col c11 593 |
32112
|
2644650
|
| 1524999 |
Cystopteris fragilis 5951 col c4 5 8 12 13 17 18 20 22 23 [9_10_12_14_15_19_3_21] |
32112
|
2644650
|
| 1525026 |
Cystopteris fragilis 5951 col c6 [1] |
32112
|
2644650
|
| 1525022 |
Cystopteris fragilis 6380 Arg c1 [2_5_6] |
32112
|
2644650
|
| 1524834 |
Cystopteris fragilis 6380 Arg c4 588 short |
32112
|
2644650
|
| 1525002 |
Cystopteris fragilis 7009 Iceland c10 15 [9_19] |
32112
|
2644650
|
| 1525020 |
Cystopteris fragilis 7009 Iceland c7 12 13 14 16 [3_6_8_17_2_11_4_5] |
32112
|
2644650
|
| 1525014 |
Cystopteris fragilis 7248 Switz c2 [3_7] |
32112
|
2644650
|
| 1525015 |
Cystopteris fragilis 7248 Switz c4 5 6 [1] |
32112
|
2644650
|
| 1525010 |
Cystopteris fragilis 7625 Taiwan c1 [6] |
32112
|
2644650
|
| 1525009 |
Cystopteris fragilis 7625 Taiwan c2 4 [3_5] |
32112
|
2644650
|
| 1525013 |
Cystopteris montana 5839 NFD c1 [5_4_7] |
|
2644652
|
| 1525000 |
Cystopteris moupinensis 4861 Tai c4 [1_2_3_5] |
|
9303010
|
| 1524996 |
Cystopteris protrusa 5838 Mis c1 [4] |
|
2644653
|
| 1525011 |
Cystopteris protrusa 5838 Mis c2 5 [3] |
|
2644653
|
| 1524952 |
Cystopteris tasmanica 6379 NZ c1 603 |
|
10820712
|
| 1525025 |
Cystopteris tenuis 6387 VT c1 4 8 14 [3_6] |
|
2666587
|
| 1525012 |
Cystopteris tenuis 6387 VT c10 [7_11_12] |
|
2666587
|
| 1524992 |
Gymnocarpium appalachianum 7639 Virg c2 4 6 10 [1_5_7_9] |
|
2667325
|
| 1525006 |
Gymnocarpium appalachianum 7800 Virg c9 12 [1_11_10_14_8_15_2_16_17] |
|
2667325
|
| 1524997 |
Gymnocarpium disjunctum 4710 ALSK c2 [1_3_4] |
|
2667326
|
| 1525028 |
Gymnocarpium disjunctum 7751 Wash c2 5 9 13 [11_12] |
|
2667326
|
| 1525027 |
Gymnocarpium disjunctum 7751 Wash c6 [1_10_14_15] |
|
2667326
|
| 1525017 |
Gymnocarpium dryopteris |
32116
|
2644711
|
| 1525016 |
Gymnocarpium dryopteris 5837 Fin c1 2 [3] |
32116
|
2644711
|
| 1524926 |
Gymnocarpium dryopteris 5837 Fin c4 5 6 7 658bp |
32116
|
2644711
|
| 1524862 |
Gymnocarpium dryopteris 7981 Japan c16 19 658 |
32116
|
2644711
|
| 1524993 |
Gymnocarpium dryopteris 7981 Japan c2 5 10 12 [1_4_7_11_13_18] |
32116
|
2644711
|
| 1525005 |
Gymnocarpium dryopteris 7981 Japan c3 6 [8_9_15_17] |
32116
|
2644711
|
| 1524995 |
Gymnocarpium dryopteris 8031 Ont c6 [4_5] |
32116
|
2644711
|
| 1524925 |
Gymnocarpium jessoense parvulum 6979 Ont c1 658 |
|
3877192
|
| 1524876 |
Gymnocarpium jessoense parvulum 6979 Ont c3 c4 658 |
|
3877192
|
| 1525018 |
Gymnocarpium jessoense parvulum 8120 Russia c1 2 3 7 10 12 [5_11] |
|
3877192
|
| 1525019 |
Gymnocarpium jessoense parvulum 8120 Russia c6 8 9 [4] |
|
3877192
|
| 1524930 |
Gymnocarpium remotepinnatum 4862 Tai c3 658 |
623704
|
|
| 1525001 |
Gymnocarpium remotepinnatum 4862 Tai c4 6 7 [1_2_5] |
623704
|
|
| 1524994 |
Gymnocarpium robertianum 7945 Norw c4 12 13 14 [3_7_10_9_11] |
|
2644713
|
| 1525004 |
Gymnocarpium robertianum 7945 Norw c5 8 [1] |
|
2644713
|