@ARTICLE{TreeBASE2Ref31027,
author = {Carolina Delfini and Juan Manuel Acosta and Vinicius Castro Souza and Fernando Omar Zuloaga},
title = {Molecular Phylogeny of Axonopus (Poaceae, Panicoideae, Paspaleae): Monophyly, Synapomorphies, and Taxonomic Implications for Infrageneric Classification and Species Complexes},
year = {2020},
keywords = {Centrochloa; grasses; morphological character evolution; Ophiochloa; systematics; taxonomy},
doi = {10.3417/2020451},
url = {},
pmid = {},
journal = {Annals of the Missouri Botanical Garden},
volume = {105},
number = {4},
pages = {459--480},
abstract = {Axonopus P. Beauv. comprises nearly 90, mostly New World, species characterized by having spikelets with the inverse position (i.e., the backs of the upper glume and the upper lemma turned away from the rachis). The genus has been divided into four sections, five series, and three subseries, based exclusively on morphological features. Previous phylogenetic analyses based on a limited sampling of species showed Axonopus to be a monophyletic genus. In this study we increased the number of species sampled (46 species in the combined tree) and sequenced four DNA regions (external transcribed spacer [ETS], internal transcribed spacer [ITS], trnL-F, and ndhF). We tested the monophyly of Axonopus and its traditional infrageneric categories using parsimony, likelihood, and Bayesian inference. Additionally, we performed ancestral character state reconstructions of 45 morphological characters to infer autapomorphies for the species and synapomorphies for the genus and clades. Our findings confirmed Axonopus as a monophyletic genus only when Centrochloa Swallen and Ophiochloa Filg., Davidse & Zuloaga are included within it. Our analyses also showed that, with the exception of section Lappagopsis, infrageneric categories from previous classifications of the genus are artificial. Twenty-one morphological character states were identified as potential autapomorphies; two were reconstructed as potential synapomorphies for Axonopus, whereas 12 were reconstructed as potential synapomorphies for specific clades within the genus. Further molecular analyses, including sequencing of unlinked nuclear genes, are needed in order to reach a robust phylogenetic classification of the genus.}
}
Citation title: "Molecular Phylogeny of Axonopus (Poaceae, Panicoideae, Paspaleae): Monophyly, Synapomorphies, and Taxonomic Implications for Infrageneric Classification and Species Complexes".
Study name: "Molecular Phylogeny of Axonopus (Poaceae, Panicoideae, Paspaleae): Monophyly, Synapomorphies, and Taxonomic Implications for Infrageneric Classification and Species Complexes".
This study is part of submission 26628
(Status: Published).
Analyses
Analysis 1
Analysis 2
1 Input object(s)
Axonopus ML matrix (todos)
1 Output object(s)
ML_tree_todos
Analysis 3
1 Input object(s)
Axonopus MP matrix (todos)
1 Output object(s)
todos_Strict Consensus of 160 trees from Trees stored in block "Imported trees"
Analysis 4
1 Input object(s)
Axonopus BI matrix (nucleo)
1 Output object(s)
nucleo_con 50 majrule
Analysis 5
1 Input object(s)
Axonopus ML matrix (nucleo)
1 Output object(s)
nucleo_ML
Analysis 6
1 Input object(s)
Axonopus MP matrix (nucleo)
1 Output object(s)
nucleo_Strict Consensus of 160 trees from Trees stored in block "Imported trees"
Analysis 7
1 Input object(s)
Axonopus BI matrix (plastid)
1 Output object(s)
plastid_con 50 majrule
Analysis 8
1 Input object(s)
Axonopus ML matrix (plastid)
1 Output object(s)
ML tree_plastid
Analysis 9
1 Input object(s)
Axonopus MP matrix (plastid)
1 Output object(s)
plastid_Strict Consensus of 20000 trees from Trees stored in block "Imported trees"
Analysis 10
1 Input object(s)
Axonopus BI matrix ETS
1 Output object(s)
ETS_con 50 majrule
Analysis 11
1 Input object(s)
Axonopus ML matrix ETS
1 Output object(s)
ETS_ML
Analysis 12
1 Input object(s)
Axonopus MP matrix ETS
1 Output object(s)
ETS_Strict Consensus of 1099 trees from Trees stored in block "Imported trees"
Analysis 13
1 Input object(s)
Axonopus BI matrix ITS
1 Output object(s)
ITS_con 50 majrule
Analysis 14
1 Input object(s)
Axonopus ML matrix ITS
1 Output object(s)
ML tree_ITS
Analysis 15
1 Input object(s)
Axonopus MP matrix ITS
1 Output object(s)
ITS_Strict Consensus of 32 trees from Trees stored in block "Imported trees"
Analysis 16
1 Input object(s)
Axonopus BI matrix ndhF
1 Output object(s)
ndhF_con 50 majrule
Analysis 17
1 Input object(s)
Axonopus ML matrix ndhF
1 Output object(s)
ML tree_ndhF
Analysis 18
1 Input object(s)
Axonopus MP matrix ndhF
1 Output object(s)
ndhF_Strict Consensus of 20000 trees from Trees stored in block "Imported trees"
Analysis 19
1 Input object(s)
Axonopus BI matrix trnL-F
1 Output object(s)
trnL_con 50 majrule
Analysis 20
1 Input object(s)
Axonopus ML matrix trnL-F
1 Output object(s)
ML tree_trnL-F
Analysis 21
1 Input object(s)
Axonopus MP matrix trnL-F
1 Output object(s)
trnL-F_Strict Consensus of 45 trees from Trees stored in block "Imported trees"