@ARTICLE{TreeBASE2Ref19906,
author = {Caroline Souffreau and Heroen Verbruggen and Alexander P. Wolfe and Pieter Vanormelingen and Peter A. Siver and Eileen J. Cox and David G. Mann and Bart Van de Vijver and Koen Sabbe and Wim Vyverman},
title = {A time-calibrated multi-gene phylogeny of the diatom genus Pinnularia },
year = {2011},
keywords = {Molecular phylogenetics; relaxed molecular clock; fossil record; raphid diatoms; Pinnularia; Bacillariophyceae; Eocene},
doi = {10.1016/j.ympev.2011.08.031},
url = {http://},
pmid = {},
journal = {Molecular phylogenetics and Evolution},
volume = {61},
number = {},
pages = {866--879},
abstract = {Pinnularia is an ecologically important and species-rich genus of freshwater diatoms
(Bacillariophyceae) having considerable variation in frustule morphology. Interspecific evolutionary
relationships were inferred for 36 Pinnularia taxa using a five-locus dataset. A range of fossil taxa,
including newly-discovered Middle Eocene forms of Pinnularia, was used to calibrate a relaxed
molecular clock analysis and investigate the temporal aspects of the genus' diversification. The multigene
approach resulted in a well-resolved phylogeny of three major clades and several subclades that
were frequently, but not universally, delimited by valve morphology. The sister genus Caloneis was not
recovered as monophyletic, confirming that, as currently delimited, this genus is not evolutionarily
meaningful and should be merged with (parts of) Pinnularia. The Pinnularia-Caloneis complex is
estimated to have diverged between the Upper Cretaceous and the early Eocene, implying a ghost
range of at least 10 million year (Ma) in the fossil record.}
}
Taxa for Study 11769

Citation title:
"A time-calibrated multi-gene phylogeny of the diatom genus Pinnularia ".

Study name:
"A time-calibrated multi-gene phylogeny of the diatom genus Pinnularia ".

This study is part of submission 11769
(Status: Published).
Taxa
| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 702515 |
Caloneis budensis AM710470 |
431338
|
3311443
|
| 702525 |
Caloneis lauta AM710506 |
431339
|
3311447
|
| 702538 |
Caloneis silicula Cal 890 TM |
|
3881507
|
| 702519 |
Eolimna minima AM710427 |
137466
|
3533427
|
| 702523 |
Mayamaea atomus var. permitis AM710435 |
|
3321474
|
| 702529 |
Mayamaea atomus var. permitis Wes2 f |
|
3321474
|
| 702517 |
Pinnularia acrosphaeria Enc2 b |
431571
|
3869101
|
| 702512 |
Pinnularia acuminata Pin 876 TM |
|
3311905
|
| 702522 |
Pinnularia australogibba var. subcapitata W045 b |
|
|
| 702554 |
Pinnularia borealis Alka1 |
|
3869102
|
| 702516 |
Pinnularia borealis Ecrins7 a |
|
3869102
|
| 702539 |
Pinnularia borealis Tor12 d |
|
3869102
|
| 702546 |
Pinnularia borealis Tor3 a |
|
3869102
|
| 702528 |
Pinnularia cf. altiplanensis Tor11 b |
|
3534572
|
| 702545 |
Pinnularia cf. isselana Cal 878 TM |
|
|
| 702551 |
Pinnularia cf. marchica Ecrins4 a |
|
|
| 702533 |
Pinnularia cf. microstauron Southern microstauron B2 c |
431577
|
3869120
|
| 702527 |
Pinnularia grunowii Pin 889 MG |
|
3534613
|
| 702547 |
Pinnularia mesolepta AM710461 |
431576
|
3869119
|
| 702530 |
Pinnularia neglectiformis Pin706 F |
|
3534639
|
| 702520 |
Pinnularia neomajor Corsea 2 |
|
3311080
|
| 702531 |
Pinnularia neomajor Tor1 a |
|
3311080
|
| 702553 |
Pinnularia nodosa Pin 885 TM |
445253
|
3869122
|
| 702541 |
Pinnularia parvulissima Pin 877 TM |
|
3534655
|
| 702521 |
Pinnularia sp. Pin 873 TM |
|
|
| 702552 |
Pinnularia sp. PinnC7 |
|
|
| 702526 |
Pinnularia sp. Tor4 i |
|
|
| 702543 |
Pinnularia sp. Tor4 r |
|
|
| 702513 |
Pinnularia sp. Wie a |
|
|
| 702540 |
Pinnularia sp. divergens-group Tor1 b |
|
|
| 702544 |
Pinnularia sp. divergens-group Tor7 c |
|
|
| 702548 |
Pinnularia sp. gibba-group Tor7 f |
|
|
| 702524 |
Pinnularia sp. gibba-group Tor8 b |
|
|
| 702537 |
Pinnularia sp. subcommutata-group Pin 649 K |
|
|
| 702536 |
Pinnularia sp. subcommutata-group Pin 883 |
|
|
| 702532 |
Pinnularia subanglica Pin 650 K |
|
3534707
|
| 702535 |
Pinnularia subcapitata var. elongata Wie c |
|
3311086
|
| 702514 |
Pinnularia subcommutata var. nonfasciata Corsea 10 |
|
|
| 702518 |
Pinnularia substreptoraphe AM710503 |
431580
|
|
| 702534 |
Pinnularia viridiformis Enc2 a |
431581
|
3311090
|
| 702550 |
Pinnularia viridiformis Pin 870 MG |
431581
|
3311090
|
| 702542 |
Pinnularia viridis AM710490 |
431582
|
3869095
|
| 702511 |
Sellaphora blackfordensis Bfp04 02 |
433383
|
3535873
|
| 702549 |
Sellaphora blackfordensis Bfp5x8 F1-3 |
433383
|
3535873
|