@ARTICLE{TreeBASE2Ref26172,
author = {No?mie S. Becker and Gabriele Margos and Helmut Blum and Stefan Krebs and Alexander Graf and Robert S. Lane and Santiago Castillo-Ramirez and Andreas Sing and Volker Fingerle},
title = {Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex},
year = {2016},
keywords = {Borrelia burgdorferi sensu lato, evolution, population genomics, host association, vector adaptation, Lyme disease},
doi = {},
url = {http://},
pmid = {},
journal = {BMC Genomics},
volume = {},
number = {},
pages = {},
abstract = {Background
The Borrelia burgdorferi sensu lato (s.l.) species complex consists of tick-transmitted bacteria and currently comprises approximately 20 named and proposed genospecies some of which are known to cause Lyme Borreliosis. Species have been defined via genetic distances and ecological niches they occupy. Understanding the evolutionary relationship of species of the complex is fundamental to explaining patterns of speciation. This in turn forms a crucial basis to frame testable hypotheses concerning the underlying processes including host and vector adaptations.
Results
Illumina Technology was used to obtain genome-wide sequence data for 93 strains of 14 named genospecies of the B. burgdorferi species complex and genomic data already published for 18 additional strain (including one new species) was added. Phylogenetic reconstruction based on 114 orthologous single copy genes shows that the genospecies represent clearly distinguishable taxa with recent and still ongoing speciation events apparent in Europe and Asia. The position of Borrelia species in the phylogeny is consistent with host associations constituting a major driver for speciation. Interestingly, the data also demonstrate that vector associations are an additional driver for diversification in this tick-borne species complex. This is particularly obvious in B. bavariensis, a rodent adapted species that has diverged from the bird-associated B. garinii most likely in Asia. It now consists of two populations one of which most probably invaded Europe following adaptation to a new vector (Ixodes ricinus) and currently expands its distribution range.
Conclusions
The results imply that genotypes/species with novel properties regarding host or vector associations have evolved recurrently during the history of the species complex and may emerge at any time. We suggest that the finding of vector associations as a driver for diversification may be a general pattern for tick-borne pathogens. The core genome analysis presented here provides an important source for investigations of the underlying mechanisms of speciation in tick-borne pathogens. }
}
Taxa for tree 97624 of Study 19663

Citation title:
"Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex".

Study name:
"Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex".

This study is part of submission 19663
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 2379612 |
Borrelia afzelii HLJ01 |
29518
|
2554492
|
| 2379570 |
Borrelia afzelii K78 |
29518
|
2554492
|
| 2379611 |
Borrelia afzelii PAlt |
|
|
| 2379663 |
Borrelia afzelii PBabu |
|
|
| 2379562 |
Borrelia afzelii PBec |
|
|
| 2379618 |
Borrelia afzelii PFes |
|
|
| 2379647 |
Borrelia afzelii PHam |
|
|
| 2379651 |
Borrelia afzelii PJe |
|
|
| 2379560 |
Borrelia afzelii PKl |
|
|
| 2379637 |
Borrelia afzelii PKo |
390236
|
10314579
|
| 2379593 |
Borrelia afzelii PKr |
|
|
| 2379658 |
Borrelia afzelii PMel |
|
|
| 2379610 |
Borrelia afzelii PObf |
|
|
| 2379616 |
Borrelia afzelii Tom3107 |
29518
|
2554492
|
| 2379582 |
Borrelia afzelii UO1 |
29518
|
2554492
|
| 2379627 |
Borrelia afzelii UO5 |
29518
|
2554492
|
| 2379628 |
Borrelia afzellii PSto |
|
|
| 2379578 |
Borrelia americana |
478807
|
|
| 2379626 |
Borrelia bavariensis A104S |
664662
|
|
| 2379575 |
Borrelia bavariensis A91S |
664662
|
|
| 2379630 |
Borrelia bavariensis BgVir |
|
|
| 2379567 |
Borrelia bavariensis DK6 |
664662
|
|
| 2379640 |
Borrelia bavariensis FujiP2 |
664662
|
|
| 2379576 |
Borrelia bavariensis Hiratsuka |
|
|
| 2379590 |
Borrelia bavariensis J14 |
664662
|
|
| 2379639 |
Borrelia bavariensis J15 |
664662
|
|
| 2379594 |
Borrelia bavariensis J20T |
664662
|
|
| 2379589 |
Borrelia bavariensis Konnai17 |
664662
|
|
| 2379646 |
Borrelia bavariensis Lubl25 |
664662
|
|
| 2379653 |
Borrelia bavariensis N346 |
664662
|
|
| 2379662 |
Borrelia bavariensis NMJW1 |
664662
|
|
| 2379625 |
Borrelia bavariensis NT24 |
664662
|
|
| 2379581 |
Borrelia bavariensis PBN |
|
|
| 2379599 |
Borrelia bavariensis PBaeII |
|
|
| 2379606 |
Borrelia bavariensis PBar |
|
|
| 2379638 |
Borrelia bavariensis PBi |
|
|
| 2379666 |
Borrelia bavariensis PEi |
|
|
| 2379596 |
Borrelia bavariensis PHerI |
|
|
| 2379600 |
Borrelia bavariensis PLad |
|
|
| 2379649 |
Borrelia bavariensis PNeb |
|
|
| 2379634 |
Borrelia bavariensis PNi |
|
|
| 2379579 |
Borrelia bavariensis PRab |
|
|
| 2379623 |
Borrelia bavariensis PRof |
|
|
| 2379650 |
Borrelia bavariensis PTrob |
|
|
| 2379563 |
Borrelia bavariensis PWin |
|
|
| 2379655 |
Borrelia bavariensis PZwi |
|
|
| 2379583 |
Borrelia bavariensis SZ |
|
|
| 2379642 |
Borrelia bissettiae DN127 |
|
|
| 2379566 |
Borrelia bissettiae PGeb |
|
|
| 2379619 |
Borrelia burgdorferi 156a |
139
|
2554496
|
| 2379635 |
Borrelia burgdorferi B31 |
139
|
2554496
|
| 2379585 |
Borrelia burgdorferi CA382 |
139
|
2554496
|
| 2379598 |
Borrelia burgdorferi FheII |
|
|
| 2379656 |
Borrelia burgdorferi JD1 |
139
|
2554496
|
| 2379654 |
Borrelia burgdorferi N40 |
139
|
2554496
|
| 2379624 |
Borrelia burgdorferi PAbe |
|
|
| 2379607 |
Borrelia burgdorferi PAli |
|
|
| 2379622 |
Borrelia burgdorferi PBre |
|
|
| 2379608 |
Borrelia burgdorferi PDri |
|
|
| 2379556 |
Borrelia burgdorferi PFheI |
|
|
| 2379664 |
Borrelia burgdorferi PFiI |
|
|
| 2379587 |
Borrelia burgdorferi PGl |
|
|
| 2379660 |
Borrelia burgdorferi PHas |
|
|
| 2379621 |
Borrelia burgdorferi PKlFII |
|
|
| 2379559 |
Borrelia burgdorferi PKu |
|
|
| 2379636 |
Borrelia burgdorferi PLue |
|
|
| 2379648 |
Borrelia burgdorferi PMeh |
|
|
| 2379573 |
Borrelia burgdorferi PMi |
|
|
| 2379645 |
Borrelia burgdorferi PSst |
|
|
| 2379591 |
Borrelia burgdorferi Z4/12/93 |
139
|
2554496
|
| 2379614 |
Borrelia burgdorferi ZS7 |
139
|
2554496
|
| 2379571 |
Borrelia californiensis |
373543
|
10303815
|
| 2379568 |
Borrelia carolinensis |
478174
|
|
| 2379565 |
Borrelia chilensis |
|
|
| 2379661 |
Borrelia garinii 20047 |
29519
|
2554502
|
| 2379569 |
Borrelia garinii HT59 |
29519
|
2554502
|
| 2379620 |
Borrelia garinii J21 |
29519
|
2554502
|
| 2379572 |
Borrelia garinii Konnai20 |
29519
|
2554502
|
| 2379631 |
Borrelia garinii Malouvrh |
|
|
| 2379604 |
Borrelia garinii NT31 |
29519
|
2554502
|
| 2379629 |
Borrelia garinii PBes |
|
|
| 2379557 |
Borrelia garinii PBr |
498743
|
|
| 2379615 |
Borrelia garinii PFr |
|
|
| 2379613 |
Borrelia garinii PHc |
|
|
| 2379643 |
Borrelia garinii PHez |
|
|
| 2379586 |
Borrelia garinii PKi |
|
|
| 2379574 |
Borrelia garinii PLa |
|
|
| 2379577 |
Borrelia garinii PLi |
|
|
| 2379652 |
Borrelia garinii PMa |
|
|
| 2379659 |
Borrelia garinii PMe |
|
|
| 2379597 |
Borrelia garinii PMek |
|
|
| 2379564 |
Borrelia garinii PMit |
|
|
| 2379584 |
Borrelia garinii PNov |
|
|
| 2379665 |
Borrelia garinii POhm |
|
|
| 2379609 |
Borrelia garinii PSoR |
|
|
| 2379561 |
Borrelia garinii PStg |
|
|
| 2379617 |
Borrelia garinii PUl |
|
|
| 2379601 |
Borrelia garinii UO2 |
29519
|
2554502
|
| 2379595 |
Borrelia garinii UO3 |
29519
|
2554502
|
| 2379592 |
Borrelia garinii UO4 |
29519
|
2554502
|
| 2379641 |
Borrelia japonica |
34095
|
2554507
|
| 2379603 |
Borrelia kurtenbachii 25015 |
|
|
| 2379633 |
Borrelia lusitaniae PoTiB2 |
100177
|
2554509
|
| 2379602 |
Borrelia spielmanii PHap |
|
|
| 2379580 |
Borrelia spielmanii PMEW |
|
|
| 2379588 |
Borrelia spielmanii PMai |
|
|
| 2379657 |
Borrelia valaisiana 100B40 |
62088
|
2554521
|
| 2379558 |
Borrelia valaisiana 89B13 |
62088
|
2554521
|
| 2379632 |
Borrelia valaisiana Tom4006 |
62088
|
2554521
|
| 2379605 |
Borrelia yangtzensis |
|
|
| 2379644 |
Borrrelia valaisiana VS116 |
|
|