TreeBASE Search-Trees for study 13538

@ARTICLE{TreeBASE2Ref21463, author = {Gregory Michael Bonito}, title = {A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal}, year = {2010}, keywords = {biodiversity, biogeography, hypogeous fungi, invasive biology, ITS rDNA, phylog- eny, Tuber}, doi = {10.1111/j.1365-294X.2010.04855.x}, url = {http://www.ncbi.nlm.nih.gov/pubmed/21040049}, pmid = {2104}, journal = {Molecular Ecology}, volume = {19}, number = {22}, pages = {4994--5008}, abstract = {Truffles (Tuber) are ectomycorrhizal fungi characterized by hypogeous fruitbodies. Their biodiversity, host associations and geographical distributions are not well documented. ITS rDNA sequences of Tuber are commonly recovered from molecular surveys of fungal communities, but most remain insufficiently identified making it difficult to determine whether these sequences represent conspecific or novel taxa. In this meta-analysis, over 2000 insufficiently identified Tuber sequences from 76 independent studies were analysed within a phylogenetic framework. Species ranges, host associates, geographical distributions and intra- and interspecific ITS variability were assessed. Over 99% of the insufficiently identified Tuber sequences grouped within clades composed of species with little culinary value (Maculatum, Puberulum and Rufum). Sixty-four novel phylotypes were distinguished including 36 known only from ectomycorrhizae or soil. Most species of Tuber showed 1-3% intraspecific ITS variability and >4% interspecific ITS sequence variation. We found 123 distinct phylotypes based on 96% ITS sequence similarity and estimated that Tuber contains a minimum of 180 species. Based on this meta-analysis, species in Excavatum, Maculatum and Rufum clades exhibit preference for angiosperm hosts, whereas those in the Gibbosum clade are preferential towards gymnosperms. Sixteen Tuber species (>13% of the known diversity) have putatively been introduced to continents or islands outside their native range.} }

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Trees for Study 13538

Citation title: "A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal".

Study name: "A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal".

This study is part of submission 13538 (Status: Published).

Trees

ID	Tree Label	Tree Title	Tree Type	Tree Kind	Taxa
Tr58038	PAUP 12	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58371	Fig. 4	Tuber Rufum Clade	Single	Species Tree	View Taxa
Tr58031	PAUP 5	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58030	PAUP 4	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58372	Fig. 3a	Tuber Maculatum Clade	Single	Species Tree	View Taxa
Tr58036	PAUP 10	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58029	PAUP 3	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58374	Fig. 3c	Tuber Maculatum Clade	Single	Species Tree	View Taxa
Tr58032	PAUP 6	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58028	PAUP 2	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58039	PAUP 13	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58037	PAUP 11	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58034	PAUP 8	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58033	PAUP 7	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58035	PAUP 9	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58027	PAUP 1	Fig1 Tuber ITS GuideTree	Single	Species Tree	View Taxa
Tr58370	Fig. 2	Tuber Puberulum Clade	Single	Species Tree	View Taxa
Tr58373	Fig. 3b	Tuber Maculatum Clade	Single	Species Tree	View Taxa