TreeBASE Search-Matrices for study 20109

@ARTICLE{TreeBASE2Ref26497, author = {Tao Yang and Johannes (Ewald) Zacharias Groenewald and Ratchadawan Cheewangkoon and fahimeh jami and Jafar Abdollahzadeh and Lorenzo Lombard and Pedro W. Crous}, title = {Families, genera and species of Botryosphaeriales}, year = {2017}, keywords = {canker pathogens, Multi-Locus Sequence Typing (MLST), systematics}, doi = {10.1016/j.funbio.2016.11.001}, url = {http://www.sciencedirect.com/science/article/pii/S1878614616301568}, pmid = {283175}, journal = {Fungal Biology }, volume = {121}, number = {4}, pages = {322--346}, abstract = {Members of Botryosphaeriales are ecologically diverse, but most commonly associated with leaf spots, fruit and root rots, die-back or cankers of diverse woody hosts. Based on morphology and DNA sequence data, the Botryosphaeriales have to date been shown to contain eight families, of which the Botryosphaeriaceae is the best represented with molecular data. Furthermore, Oblongocollomyces is introduced as new genus, while Spencermartinsia is reduced to synonymy under Dothiorella. Novel species include Diplodia pyri (Pyrus sp., the Netherlands), Diplodia citricarpa (Citrus sp., Iran), Lasiodiplodia vitis (Vitis vinifera, Italy), L. sterculiae (Sterculia oblonga, Germany), Neofusicoccum pistaciarum (Pistacia vera, USA), N. buxi (Buxus sempervirens, France), N. stellenboschiana (Vitis vinifera, South Africa), and Saccharata hawaiiensis (Protea laurifolia, Hawaii). New combinations are also proposed for Camarosporium pistaciae (associated with fruit rot of Pistacia vera) in Neofusicoccum, and Sphaeria gallae (associated with galls of Quercus) in Diplodia. The combination of LSU-rpb2 proved effective at delineating taxa at family and generic level. Furthermore, rpb2 also added additional resolution for species delimitation, in combination with ITS, tef1 and tub2. In this study we analysed 499 isolates, and produce an expanded phylogenetic backbone for Botryosphaeriales, which will help to delimit novelties at species, genus and family level in future.} }

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Matrices for Study 20109

Citation title: "Families, genera and species of Botryosphaeriales".

Study name: "Families, genera and species of Botryosphaeriales".

This study is part of submission 20109 (Status: Published).

Matrices

ID	Matrix Title	Description	Data type	NTAX	NCHAR	Taxa
M40558	Neofusicoccum phylogeny	Combined tef1, ITS, rpb2 and tub2 sequence alignment	Nucleic Acid	60	1925	View Taxa
M40561	Tiarosporella-like genera phylogeny	Combined tef1, ITS and tub2 sequence alignment	Nucleic Acid	19	1042	View Taxa
M40562	Supplementary phylogeny S1 Lasiodiplodia	Combined tef1 and ITS sequence alignment	Nucleic Acid	72	780	View Taxa
M40560	Saccharata phylogeny	Combined tef1, ITS and rpb2 sequence alignment	Nucleic Acid	15	1624	View Taxa
M40563	Supplementary phylogeny S2 Neofusicoccum	Combined tef1 and ITS sequence alignment	Nucleic Acid	199	852	View Taxa
M40554	Overview phylogeny	Combined LSU and rpb2 sequence alignment	Nucleic Acid	100	1522	View Taxa
M40557	Lasiodiplodia phylogeny	Combined tub2, tef1 and ITS sequence alignment	Nucleic Acid	28	1252	View Taxa
M40555	Diplodia phylogeny	Combined tef1, ITS and tub2 sequence alignment	Nucleic Acid	90	1285	View Taxa
M40559	Phaeobotryon and Barriopsis phylogeny	Combined LSU, tef1 and ITS sequence alignment	Nucleic Acid	10	1427	View Taxa
M40556	Dothiorella phylogeny	Combined tef1, ITS and tub2 sequence alignment	Nucleic Acid	71	1295	View Taxa